Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 HLA-V-204ENST00000476601 1289 ntBASIC22.35■■□□□ 1.17
COL18A1P39060 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL18A1P39060 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC22.35■■□□□ 1.17
COL18A1P39060 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC22.35■■□□□ 1.17
COL18A1P39060 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC22.35■■□□□ 1.17
COL18A1P39060 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL18A1P39060 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL18A1P39060 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC22.35■■□□□ 1.17
COL18A1P39060 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
COL18A1P39060 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
COL18A1P39060 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
COL18A1P39060 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL18A1P39060 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC22.35■■□□□ 1.17
COL18A1P39060 PP14571-201ENST00000404327 934 ntTSL 2 BASIC22.35■■□□□ 1.17
COL18A1P39060 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC22.35■■□□□ 1.17
COL18A1P39060 AC009407.1-201ENST00000568958 598 ntBASIC22.35■■□□□ 1.17
COL18A1P39060 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL18A1P39060 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL18A1P39060 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
COL18A1P39060 KRT8P49-201ENST00000604166 1432 ntBASIC22.35■■□□□ 1.17
COL18A1P39060 AL133215.2-201ENST00000609242 977 ntBASIC22.35■■□□□ 1.17
COL18A1P39060 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC22.35■■□□□ 1.17
COL18A1P39060 GRAMD4P3-201ENST00000621665 1669 ntBASIC22.35■■□□□ 1.17
COL18A1P39060 AC104581.1-202ENST00000635932 2618 ntBASIC22.35■■□□□ 1.17
COL18A1P39060 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL18A1P39060 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC22.34■■□□□ 1.17
COL18A1P39060 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL18A1P39060 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL18A1P39060 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL18A1P39060 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL18A1P39060 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL18A1P39060 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC22.34■■□□□ 1.17
COL18A1P39060 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC22.34■■□□□ 1.17
COL18A1P39060 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL18A1P39060 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
COL18A1P39060 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL18A1P39060 AC079776.1-201ENST00000401540 1152 ntBASIC22.34■■□□□ 1.17
COL18A1P39060 STARD13-205ENST00000439831 945 ntTSL 2 BASIC22.34■■□□□ 1.17
COL18A1P39060 CDK4-206ENST00000549606 558 ntTSL 2 BASIC22.34■■□□□ 1.17
COL18A1P39060 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL18A1P39060 AC027307.3-201ENST00000594262 1100 ntBASIC22.34■■□□□ 1.17
COL18A1P39060 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC22.34■■□□□ 1.17
COL18A1P39060 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC22.34■■□□□ 1.17
COL18A1P39060 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC22.34■■□□□ 1.17
COL18A1P39060 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
COL18A1P39060 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL18A1P39060 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
COL18A1P39060 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL18A1P39060 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC22.33■■□□□ 1.17
COL18A1P39060 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL18A1P39060 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC22.33■■□□□ 1.17
COL18A1P39060 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC22.33■■□□□ 1.17
COL18A1P39060 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC22.33■■□□□ 1.17
COL18A1P39060 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC22.33■■□□□ 1.17
COL18A1P39060 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL18A1P39060 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL18A1P39060 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC22.33■■□□□ 1.17
COL18A1P39060 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC22.33■■□□□ 1.17
COL18A1P39060 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC22.33■■□□□ 1.17
COL18A1P39060 SIGLEC29P-201ENST00000599873 1114 ntBASIC22.33■■□□□ 1.17
COL18A1P39060 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC22.33■■□□□ 1.17
COL18A1P39060 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
COL18A1P39060 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL18A1P39060 SLC9A3P2-201ENST00000447821 2021 ntBASIC22.33■■□□□ 1.16
COL18A1P39060 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL18A1P39060 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL18A1P39060 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC22.33■■□□□ 1.16
COL18A1P39060 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
COL18A1P39060 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC22.33■■□□□ 1.16
COL18A1P39060 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL18A1P39060 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL18A1P39060 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL18A1P39060 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
COL18A1P39060 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.16
COL18A1P39060 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC22.33■■□□□ 1.16
COL18A1P39060 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL18A1P39060 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
COL18A1P39060 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL18A1P39060 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL18A1P39060 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC22.33■■□□□ 1.16
COL18A1P39060 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL18A1P39060 ZNF890P-202ENST00000530367 1156 ntBASIC22.33■■□□□ 1.16
COL18A1P39060 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC22.33■■□□□ 1.16
COL18A1P39060 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL18A1P39060 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC22.32■■□□□ 1.16
COL18A1P39060 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL18A1P39060 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC22.32■■□□□ 1.16
COL18A1P39060 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL18A1P39060 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL18A1P39060 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
COL18A1P39060 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC22.32■■□□□ 1.16
COL18A1P39060 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC22.32■■□□□ 1.16
COL18A1P39060 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
COL18A1P39060 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC22.32■■□□□ 1.16
COL18A1P39060 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL18A1P39060 AC140912.1-201ENST00000577171 1054 ntBASIC22.32■■□□□ 1.16
COL18A1P39060 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC22.32■■□□□ 1.16
COL18A1P39060 RNA5-8SN1-201ENST00000610460 153 ntBASIC22.32■■□□□ 1.16
COL18A1P39060 RNA5-8SN5-202ENST00000612463 153 ntBASIC22.32■■□□□ 1.16
COL18A1P39060 AC003101.2-201ENST00000612557 442 ntBASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms