Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.01■□□□□ 0.79
SCN4AP35499 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
SCN4AP35499 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
SCN4AP35499 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC20.01■□□□□ 0.79
SCN4AP35499 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCN4AP35499 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCN4AP35499 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
SCN4AP35499 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC20■□□□□ 0.79
SCN4AP35499 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20■□□□□ 0.79
SCN4AP35499 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
SCN4AP35499 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SCN4AP35499 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
SCN4AP35499 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SCN4AP35499 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC20■□□□□ 0.79
SCN4AP35499 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC20■□□□□ 0.79
SCN4AP35499 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC20■□□□□ 0.79
SCN4AP35499 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC20■□□□□ 0.79
SCN4AP35499 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC20■□□□□ 0.79
SCN4AP35499 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC20■□□□□ 0.79
SCN4AP35499 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC20■□□□□ 0.79
SCN4AP35499 HARS-204ENST00000438307 1789 ntTSL 2 BASIC20■□□□□ 0.79
SCN4AP35499 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCN4AP35499 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
SCN4AP35499 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
SCN4AP35499 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
SCN4AP35499 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20■□□□□ 0.79
SCN4AP35499 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCN4AP35499 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
SCN4AP35499 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
SCN4AP35499 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC19.99■□□□□ 0.79
SCN4AP35499 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC19.99■□□□□ 0.79
SCN4AP35499 CD81-207ENST00000481687 890 ntTSL 2 BASIC19.99■□□□□ 0.79
SCN4AP35499 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC19.99■□□□□ 0.79
SCN4AP35499 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC19.99■□□□□ 0.79
SCN4AP35499 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC19.99■□□□□ 0.79
SCN4AP35499 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC19.99■□□□□ 0.79
SCN4AP35499 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC19.99■□□□□ 0.79
SCN4AP35499 MIR6787-201ENST00000616675 61 ntBASIC19.99■□□□□ 0.79
SCN4AP35499 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCN4AP35499 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCN4AP35499 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC19.99■□□□□ 0.79
SCN4AP35499 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SCN4AP35499 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC19.99■□□□□ 0.79
SCN4AP35499 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SCN4AP35499 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCN4AP35499 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCN4AP35499 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC19.99■□□□□ 0.79
SCN4AP35499 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.99■□□□□ 0.79
SCN4AP35499 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.99■□□□□ 0.79
SCN4AP35499 AC092933.1-201ENST00000393644 945 ntBASIC19.99■□□□□ 0.79
SCN4AP35499 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCN4AP35499 DOC2GP-202ENST00000514950 1163 ntBASIC19.99■□□□□ 0.79
SCN4AP35499 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC19.99■□□□□ 0.79
SCN4AP35499 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC19.99■□□□□ 0.79
SCN4AP35499 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
SCN4AP35499 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC19.99■□□□□ 0.79
SCN4AP35499 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCN4AP35499 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC19.99■□□□□ 0.79
SCN4AP35499 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCN4AP35499 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SCN4AP35499 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCN4AP35499 KRT8P44-201ENST00000441609 1350 ntBASIC19.99■□□□□ 0.79
SCN4AP35499 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC19.99■□□□□ 0.79
SCN4AP35499 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
SCN4AP35499 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SCN4AP35499 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SCN4AP35499 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.98■□□□□ 0.79
SCN4AP35499 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SCN4AP35499 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.98■□□□□ 0.79
SCN4AP35499 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SCN4AP35499 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC19.98■□□□□ 0.79
SCN4AP35499 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
SCN4AP35499 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC19.98■□□□□ 0.79
SCN4AP35499 BNIP3P42-201ENST00000454982 569 ntBASIC19.98■□□□□ 0.79
SCN4AP35499 RN7SL618P-201ENST00000477850 296 ntBASIC19.98■□□□□ 0.79
SCN4AP35499 BNIP3P29-201ENST00000598302 571 ntBASIC19.98■□□□□ 0.79
SCN4AP35499 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SCN4AP35499 AC011447.5-201ENST00000616168 564 ntBASIC19.98■□□□□ 0.79
SCN4AP35499 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SCN4AP35499 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SCN4AP35499 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SCN4AP35499 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
SCN4AP35499 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.98■□□□□ 0.79
SCN4AP35499 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
SCN4AP35499 BX323043.1-201ENST00000641006 1765 ntBASIC19.98■□□□□ 0.79
SCN4AP35499 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SCN4AP35499 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SCN4AP35499 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
SCN4AP35499 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SCN4AP35499 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC19.97■□□□□ 0.79
SCN4AP35499 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SCN4AP35499 USP32P1-208ENST00000506594 1164 ntBASIC19.97■□□□□ 0.79
SCN4AP35499 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SCN4AP35499 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC19.97■□□□□ 0.79
SCN4AP35499 AC021097.1-201ENST00000607902 574 ntBASIC19.97■□□□□ 0.79
SCN4AP35499 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SCN4AP35499 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SCN4AP35499 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
SCN4AP35499 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
SCN4AP35499 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms