Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A5P29400 AC090164.3-201ENST00000610780 2143 ntBASIC20.35■□□□□ 0.85
COL4A5P29400 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A5P29400 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A5P29400 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A5P29400 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC20.34■□□□□ 0.85
COL4A5P29400 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
COL4A5P29400 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A5P29400 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A5P29400 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A5P29400 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A5P29400 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
COL4A5P29400 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A5P29400 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A5P29400 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A5P29400 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
COL4A5P29400 SPDYE18-201ENST00000510091 1050 ntBASIC20.34■□□□□ 0.85
COL4A5P29400 AC104794.3-201ENST00000566840 1248 ntBASIC20.34■□□□□ 0.85
COL4A5P29400 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
COL4A5P29400 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
COL4A5P29400 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
COL4A5P29400 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A5P29400 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A5P29400 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A5P29400 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
COL4A5P29400 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A5P29400 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A5P29400 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A5P29400 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A5P29400 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.33■□□□□ 0.85
COL4A5P29400 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.33■□□□□ 0.85
COL4A5P29400 AC098818.2-201ENST00000564925 2320 ntBASIC20.33■□□□□ 0.85
COL4A5P29400 GRAMD4P3-201ENST00000621665 1669 ntBASIC20.33■□□□□ 0.85
COL4A5P29400 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC20.33■□□□□ 0.85
COL4A5P29400 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC20.33■□□□□ 0.85
COL4A5P29400 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC20.33■□□□□ 0.85
COL4A5P29400 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC20.33■□□□□ 0.85
COL4A5P29400 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC20.33■□□□□ 0.85
COL4A5P29400 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC20.33■□□□□ 0.85
COL4A5P29400 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC20.33■□□□□ 0.85
COL4A5P29400 PRR29-204ENST00000577953 565 ntTSL 4 BASIC20.33■□□□□ 0.85
COL4A5P29400 AC132938.2-201ENST00000579188 680 ntBASIC20.33■□□□□ 0.85
COL4A5P29400 AL606495.2-201ENST00000605867 535 ntBASIC20.33■□□□□ 0.85
COL4A5P29400 AL591163.1-201ENST00000641757 987 ntBASIC20.33■□□□□ 0.85
COL4A5P29400 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A5P29400 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
COL4A5P29400 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A5P29400 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A5P29400 AC009113.1-201ENST00000570267 2443 ntBASIC20.33■□□□□ 0.84
COL4A5P29400 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
COL4A5P29400 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A5P29400 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
COL4A5P29400 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A5P29400 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A5P29400 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A5P29400 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A5P29400 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A5P29400 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A5P29400 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC20.32■□□□□ 0.84
COL4A5P29400 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A5P29400 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A5P29400 INE1-201ENST00000456273 945 ntBASIC20.32■□□□□ 0.84
COL4A5P29400 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
COL4A5P29400 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC20.32■□□□□ 0.84
COL4A5P29400 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A5P29400 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A5P29400 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A5P29400 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A5P29400 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A5P29400 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A5P29400 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC20.32■□□□□ 0.84
COL4A5P29400 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A5P29400 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A5P29400 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A5P29400 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A5P29400 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A5P29400 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC20.32■□□□□ 0.84
COL4A5P29400 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC20.32■□□□□ 0.84
COL4A5P29400 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A5P29400 ACA64.2-201ENST00000459014 129 ntBASIC20.32■□□□□ 0.84
COL4A5P29400 TNXA-203ENST00000507684 2038 ntBASIC20.32■□□□□ 0.84
COL4A5P29400 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A5P29400 CYP2A7P1-201ENST00000595391 815 ntBASIC20.32■□□□□ 0.84
COL4A5P29400 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A5P29400 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A5P29400 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.31■□□□□ 0.84
COL4A5P29400 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A5P29400 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A5P29400 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.31■□□□□ 0.84
COL4A5P29400 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A5P29400 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A5P29400 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A5P29400 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A5P29400 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
COL4A5P29400 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A5P29400 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL4A5P29400 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A5P29400 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A5P29400 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC20.31■□□□□ 0.84
COL4A5P29400 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms