Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.32■□□□□ 0.36
PTPN4P29074 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.32■□□□□ 0.36
PTPN4P29074 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
PTPN4P29074 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN4P29074 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
PTPN4P29074 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.31■□□□□ 0.36
PTPN4P29074 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.31■□□□□ 0.36
PTPN4P29074 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
PTPN4P29074 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.31■□□□□ 0.36
PTPN4P29074 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
PTPN4P29074 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
PTPN4P29074 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
PTPN4P29074 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.31■□□□□ 0.36
PTPN4P29074 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
PTPN4P29074 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 AC246785.2-201ENST00000432512 513 ntBASIC17.31■□□□□ 0.36
PTPN4P29074 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.31■□□□□ 0.36
PTPN4P29074 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.31■□□□□ 0.36
PTPN4P29074 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.31■□□□□ 0.36
PTPN4P29074 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.31■□□□□ 0.36
PTPN4P29074 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.31■□□□□ 0.36
PTPN4P29074 AC091304.2-201ENST00000564639 760 ntBASIC17.31■□□□□ 0.36
PTPN4P29074 LINC01711-201ENST00000598340 967 ntBASIC17.31■□□□□ 0.36
PTPN4P29074 AC024563.2-201ENST00000603282 481 ntBASIC17.31■□□□□ 0.36
PTPN4P29074 IFNL4P1-201ENST00000607083 540 ntBASIC17.31■□□□□ 0.36
PTPN4P29074 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
PTPN4P29074 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
PTPN4P29074 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.31■□□□□ 0.36
PTPN4P29074 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.31■□□□□ 0.36
PTPN4P29074 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN4P29074 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.3■□□□□ 0.36
PTPN4P29074 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN4P29074 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN4P29074 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.3■□□□□ 0.36
PTPN4P29074 AC005915.1-201ENST00000624912 2018 ntBASIC17.3■□□□□ 0.36
PTPN4P29074 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN4P29074 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
PTPN4P29074 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN4P29074 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN4P29074 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.3■□□□□ 0.36
PTPN4P29074 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN4P29074 IGHGP-201ENST00000390555 1178 ntBASIC17.3■□□□□ 0.36
PTPN4P29074 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN4P29074 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN4P29074 AC104819.1-201ENST00000504587 486 ntBASIC17.3■□□□□ 0.36
PTPN4P29074 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.3■□□□□ 0.36
PTPN4P29074 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN4P29074 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN4P29074 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.3■□□□□ 0.36
PTPN4P29074 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN4P29074 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
PTPN4P29074 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.3■□□□□ 0.36
PTPN4P29074 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN4P29074 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.3■□□□□ 0.36
PTPN4P29074 AC006449.5-201ENST00000610658 2098 ntBASIC17.3■□□□□ 0.36
PTPN4P29074 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN4P29074 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN4P29074 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.3■□□□□ 0.36
PTPN4P29074 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN4P29074 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
PTPN4P29074 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
PTPN4P29074 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.29■□□□□ 0.36
PTPN4P29074 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.29■□□□□ 0.36
PTPN4P29074 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.29■□□□□ 0.36
PTPN4P29074 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
PTPN4P29074 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.29■□□□□ 0.36
PTPN4P29074 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.29■□□□□ 0.36
PTPN4P29074 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.29■□□□□ 0.36
PTPN4P29074 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.29■□□□□ 0.36
PTPN4P29074 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.29■□□□□ 0.36
PTPN4P29074 FOSL1P1-201ENST00000511041 816 ntBASIC17.29■□□□□ 0.36
PTPN4P29074 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.29■□□□□ 0.36
PTPN4P29074 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms