Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC19■□□□□ 0.63
TPM1P09493 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19■□□□□ 0.63
TPM1P09493 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TPM1P09493 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19■□□□□ 0.63
TPM1P09493 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
TPM1P09493 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 GCK-209ENST00000616242 2260 ntTSL 5 BASIC18.99■□□□□ 0.63
TPM1P09493 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
TPM1P09493 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
TPM1P09493 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 AL353692.3-201ENST00000407031 1396 ntBASIC18.99■□□□□ 0.63
TPM1P09493 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
TPM1P09493 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.99■□□□□ 0.63
TPM1P09493 IGHGP-201ENST00000390555 1178 ntBASIC18.99■□□□□ 0.63
TPM1P09493 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.99■□□□□ 0.63
TPM1P09493 HLA-F-220ENST00000434407 884 ntBASIC18.99■□□□□ 0.63
TPM1P09493 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.99■□□□□ 0.63
TPM1P09493 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
TPM1P09493 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.99■□□□□ 0.63
TPM1P09493 ZNF444P1-201ENST00000559497 298 ntBASIC18.99■□□□□ 0.63
TPM1P09493 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.99■□□□□ 0.63
TPM1P09493 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
TPM1P09493 AL023973.1-201ENST00000624619 620 ntBASIC18.99■□□□□ 0.63
TPM1P09493 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
TPM1P09493 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
TPM1P09493 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
TPM1P09493 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
TPM1P09493 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
TPM1P09493 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
TPM1P09493 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TPM1P09493 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.98■□□□□ 0.63
TPM1P09493 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TPM1P09493 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.98■□□□□ 0.63
TPM1P09493 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.98■□□□□ 0.63
TPM1P09493 AC026691.1-201ENST00000602502 2017 ntBASIC18.98■□□□□ 0.63
TPM1P09493 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.98■□□□□ 0.63
TPM1P09493 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.98■□□□□ 0.63
TPM1P09493 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TPM1P09493 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.98■□□□□ 0.63
TPM1P09493 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.98■□□□□ 0.63
TPM1P09493 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
TPM1P09493 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC18.98■□□□□ 0.63
TPM1P09493 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TPM1P09493 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.98■□□□□ 0.63
TPM1P09493 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.98■□□□□ 0.63
TPM1P09493 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
TPM1P09493 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TPM1P09493 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TPM1P09493 AC092053.1-201ENST00000605787 1936 ntBASIC18.98■□□□□ 0.63
TPM1P09493 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
TPM1P09493 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
TPM1P09493 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.97■□□□□ 0.63
TPM1P09493 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
TPM1P09493 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TPM1P09493 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.97■□□□□ 0.63
TPM1P09493 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.97■□□□□ 0.63
TPM1P09493 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TPM1P09493 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
TPM1P09493 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TPM1P09493 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TPM1P09493 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
TPM1P09493 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TPM1P09493 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TPM1P09493 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TPM1P09493 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.97■□□□□ 0.63
TPM1P09493 COX5BP2-201ENST00000392354 334 ntBASIC18.97■□□□□ 0.63
TPM1P09493 AC068472.1-201ENST00000474589 881 ntBASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms