Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.33■□□□□ 0.36
VIMP08670 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VIMP08670 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.33■□□□□ 0.36
VIMP08670 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
VIMP08670 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.32■□□□□ 0.36
VIMP08670 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
VIMP08670 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.32■□□□□ 0.36
VIMP08670 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
VIMP08670 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.32■□□□□ 0.36
VIMP08670 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VIMP08670 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.32■□□□□ 0.36
VIMP08670 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.32■□□□□ 0.36
VIMP08670 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.32■□□□□ 0.36
VIMP08670 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.32■□□□□ 0.36
VIMP08670 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.32■□□□□ 0.36
VIMP08670 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.32■□□□□ 0.36
VIMP08670 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.32■□□□□ 0.36
VIMP08670 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC17.32■□□□□ 0.36
VIMP08670 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
VIMP08670 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.32■□□□□ 0.36
VIMP08670 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VIMP08670 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.32■□□□□ 0.36
VIMP08670 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
VIMP08670 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.32■□□□□ 0.36
VIMP08670 AL365203.3-201ENST00000609742 2057 ntBASIC17.32■□□□□ 0.36
VIMP08670 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VIMP08670 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VIMP08670 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VIMP08670 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VIMP08670 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VIMP08670 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VIMP08670 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VIMP08670 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
VIMP08670 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.31■□□□□ 0.36
VIMP08670 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
VIMP08670 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.31■□□□□ 0.36
VIMP08670 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.31■□□□□ 0.36
VIMP08670 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VIMP08670 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.31■□□□□ 0.36
VIMP08670 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
VIMP08670 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
VIMP08670 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VIMP08670 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.31■□□□□ 0.36
VIMP08670 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VIMP08670 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.31■□□□□ 0.36
VIMP08670 AP003041.3-201ENST00000527151 707 ntBASIC17.31■□□□□ 0.36
VIMP08670 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.31■□□□□ 0.36
VIMP08670 KRT18P6-201ENST00000555540 1265 ntBASIC17.31■□□□□ 0.36
VIMP08670 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.31■□□□□ 0.36
VIMP08670 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VIMP08670 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VIMP08670 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.31■□□□□ 0.36
VIMP08670 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.31■□□□□ 0.36
VIMP08670 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.31■□□□□ 0.36
VIMP08670 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VIMP08670 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VIMP08670 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VIMP08670 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
VIMP08670 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.3■□□□□ 0.36
VIMP08670 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.3■□□□□ 0.36
VIMP08670 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
VIMP08670 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.3■□□□□ 0.36
VIMP08670 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.3■□□□□ 0.36
VIMP08670 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VIMP08670 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.3■□□□□ 0.36
VIMP08670 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 ESRRAP1-201ENST00000400596 1257 ntBASIC17.3■□□□□ 0.36
VIMP08670 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms