Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 MIR4515-201ENST00000584082 81 ntBASIC20.17■□□□□ 0.82
HLA-DOAP06340 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 BSG-214ENST00000614867 960 ntTSL 3 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
HLA-DOAP06340 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
HLA-DOAP06340 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC20.16■□□□□ 0.82
HLA-DOAP06340 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
HLA-DOAP06340 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC20.16■□□□□ 0.82
HLA-DOAP06340 AC140658.5-201ENST00000438532 169 ntBASIC20.16■□□□□ 0.82
HLA-DOAP06340 MMP17-203ENST00000535004 719 ntTSL 3 BASIC20.16■□□□□ 0.82
HLA-DOAP06340 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.16■□□□□ 0.82
HLA-DOAP06340 AC004835.2-201ENST00000603762 682 ntBASIC20.16■□□□□ 0.82
HLA-DOAP06340 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC20.16■□□□□ 0.82
HLA-DOAP06340 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC20.16■□□□□ 0.82
HLA-DOAP06340 AL513210.1-201ENST00000629608 234 ntBASIC20.16■□□□□ 0.82
HLA-DOAP06340 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
HLA-DOAP06340 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC20.16■□□□□ 0.82
HLA-DOAP06340 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC20.16■□□□□ 0.82
HLA-DOAP06340 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
HLA-DOAP06340 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
HLA-DOAP06340 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DOAP06340 GNAS-203ENST00000306120 1878 ntBASIC20.16■□□□□ 0.82
HLA-DOAP06340 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DOAP06340 AC134043.2-201ENST00000624206 2238 ntBASIC20.15■□□□□ 0.82
HLA-DOAP06340 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DOAP06340 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DOAP06340 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DOAP06340 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 PON3-203ENST00000427422 894 ntTSL 3 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 METTL23-205ENST00000588302 925 ntTSL 5 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DOAP06340 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DOAP06340 AL138688.1-201ENST00000624851 1594 ntBASIC20.15■□□□□ 0.82
HLA-DOAP06340 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DOAP06340 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 AC093525.9-201ENST00000624961 1746 ntBASIC20.15■□□□□ 0.82
HLA-DOAP06340 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.15■□□□□ 0.82
HLA-DOAP06340 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DOAP06340 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DOAP06340 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DOAP06340 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
HLA-DOAP06340 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC20.14■□□□□ 0.82
HLA-DOAP06340 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.14■□□□□ 0.82
HLA-DOAP06340 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DOAP06340 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DOAP06340 AL121761.2-201ENST00000598007 1648 ntBASIC20.14■□□□□ 0.81
HLA-DOAP06340 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DOAP06340 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC20.14■□□□□ 0.81
HLA-DOAP06340 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DOAP06340 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC20.14■□□□□ 0.81
HLA-DOAP06340 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DOAP06340 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC20.14■□□□□ 0.81
HLA-DOAP06340 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
HLA-DOAP06340 IGHV3OR16-6-201ENST00000568775 360 ntBASIC20.14■□□□□ 0.81
HLA-DOAP06340 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms