Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHRNA1P02708 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHRNA1P02708 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHRNA1P02708 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHRNA1P02708 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHRNA1P02708 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHRNA1P02708 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHRNA1P02708 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHRNA1P02708 SLC22A20-204ENST00000530038 1673 ntBASIC18.57■□□□□ 0.56
CHRNA1P02708 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHRNA1P02708 LETM1P2-201ENST00000597330 2178 ntBASIC18.57■□□□□ 0.56
CHRNA1P02708 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.56■□□□□ 0.56
CHRNA1P02708 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHRNA1P02708 EGFEM1P-202ENST00000431685 1563 ntBASIC18.56■□□□□ 0.56
CHRNA1P02708 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHRNA1P02708 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHRNA1P02708 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHRNA1P02708 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHRNA1P02708 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHRNA1P02708 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHRNA1P02708 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
CHRNA1P02708 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.56■□□□□ 0.56
CHRNA1P02708 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHRNA1P02708 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.56■□□□□ 0.56
CHRNA1P02708 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.56■□□□□ 0.56
CHRNA1P02708 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHRNA1P02708 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.56■□□□□ 0.56
CHRNA1P02708 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.56■□□□□ 0.56
CHRNA1P02708 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.56■□□□□ 0.56
CHRNA1P02708 AP001059.3-201ENST00000619053 235 ntBASIC18.56■□□□□ 0.56
CHRNA1P02708 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHRNA1P02708 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CHRNA1P02708 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHRNA1P02708 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHRNA1P02708 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHRNA1P02708 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHRNA1P02708 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.56■□□□□ 0.56
CHRNA1P02708 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHRNA1P02708 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHRNA1P02708 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHRNA1P02708 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHRNA1P02708 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CHRNA1P02708 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHRNA1P02708 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHRNA1P02708 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.55■□□□□ 0.56
CHRNA1P02708 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.55■□□□□ 0.56
CHRNA1P02708 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.55■□□□□ 0.56
CHRNA1P02708 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHRNA1P02708 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CHRNA1P02708 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHRNA1P02708 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.55■□□□□ 0.56
CHRNA1P02708 AC067863.1-201ENST00000494933 530 ntBASIC18.55■□□□□ 0.56
CHRNA1P02708 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHRNA1P02708 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.55■□□□□ 0.56
CHRNA1P02708 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
CHRNA1P02708 AC109635.5-201ENST00000533593 962 ntBASIC18.55■□□□□ 0.56
CHRNA1P02708 AC051619.7-201ENST00000568314 623 ntBASIC18.55■□□□□ 0.56
CHRNA1P02708 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHRNA1P02708 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC18.55■□□□□ 0.56
CHRNA1P02708 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.55■□□□□ 0.56
CHRNA1P02708 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
CHRNA1P02708 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
CHRNA1P02708 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CHRNA1P02708 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHRNA1P02708 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHRNA1P02708 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHRNA1P02708 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.54■□□□□ 0.56
CHRNA1P02708 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.54■□□□□ 0.56
CHRNA1P02708 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHRNA1P02708 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHRNA1P02708 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHRNA1P02708 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHRNA1P02708 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHRNA1P02708 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHRNA1P02708 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHRNA1P02708 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.54■□□□□ 0.56
CHRNA1P02708 RBPMS2P1-201ENST00000437762 623 ntBASIC18.54■□□□□ 0.56
CHRNA1P02708 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CHRNA1P02708 AC069262.1-201ENST00000539058 672 ntBASIC18.54■□□□□ 0.56
CHRNA1P02708 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.54■□□□□ 0.56
CHRNA1P02708 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CHRNA1P02708 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHRNA1P02708 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHRNA1P02708 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.54■□□□□ 0.56
CHRNA1P02708 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.54■□□□□ 0.56
CHRNA1P02708 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CHRNA1P02708 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.54■□□□□ 0.56
CHRNA1P02708 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CHRNA1P02708 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.54■□□□□ 0.56
CHRNA1P02708 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHRNA1P02708 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CHRNA1P02708 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.54■□□□□ 0.56
CHRNA1P02708 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CHRNA1P02708 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHRNA1P02708 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CHRNA1P02708 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHRNA1P02708 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHRNA1P02708 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CHRNA1P02708 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHRNA1P02708 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms