Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CTDNEP1O95476 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CTDNEP1O95476 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTDNEP1O95476 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
CTDNEP1O95476 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.86■□□□□ 0.77
CTDNEP1O95476 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.86■□□□□ 0.77
CTDNEP1O95476 EMBP1-201ENST00000458200 901 ntBASIC19.86■□□□□ 0.77
CTDNEP1O95476 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.86■□□□□ 0.77
CTDNEP1O95476 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.86■□□□□ 0.77
CTDNEP1O95476 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
CTDNEP1O95476 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.86■□□□□ 0.77
CTDNEP1O95476 TP73-AS1-207ENST00000624167 988 ntBASIC19.86■□□□□ 0.77
CTDNEP1O95476 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTDNEP1O95476 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
CTDNEP1O95476 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTDNEP1O95476 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTDNEP1O95476 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTDNEP1O95476 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTDNEP1O95476 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTDNEP1O95476 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
CTDNEP1O95476 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTDNEP1O95476 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTDNEP1O95476 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
CTDNEP1O95476 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CTDNEP1O95476 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CTDNEP1O95476 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.85■□□□□ 0.77
CTDNEP1O95476 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
CTDNEP1O95476 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.85■□□□□ 0.77
CTDNEP1O95476 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CTDNEP1O95476 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CTDNEP1O95476 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDNEP1O95476 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CTDNEP1O95476 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDNEP1O95476 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.85■□□□□ 0.77
CTDNEP1O95476 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.85■□□□□ 0.77
CTDNEP1O95476 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.85■□□□□ 0.77
CTDNEP1O95476 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CTDNEP1O95476 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CTDNEP1O95476 AC006504.4-201ENST00000592118 1568 ntBASIC19.85■□□□□ 0.77
CTDNEP1O95476 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.85■□□□□ 0.77
CTDNEP1O95476 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDNEP1O95476 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC19.85■□□□□ 0.77
CTDNEP1O95476 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.85■□□□□ 0.77
CTDNEP1O95476 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDNEP1O95476 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.85■□□□□ 0.77
CTDNEP1O95476 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.85■□□□□ 0.77
CTDNEP1O95476 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 AL603756.1-201ENST00000606511 2163 ntBASIC19.84■□□□□ 0.77
CTDNEP1O95476 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 PAWRP1-201ENST00000451083 565 ntBASIC19.84■□□□□ 0.77
CTDNEP1O95476 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.84■□□□□ 0.77
CTDNEP1O95476 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CTDNEP1O95476 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.77
CTDNEP1O95476 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
CTDNEP1O95476 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.83■□□□□ 0.77
CTDNEP1O95476 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CTDNEP1O95476 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CTDNEP1O95476 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.77
CTDNEP1O95476 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CTDNEP1O95476 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.83■□□□□ 0.77
CTDNEP1O95476 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.83■□□□□ 0.77
CTDNEP1O95476 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CTDNEP1O95476 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CTDNEP1O95476 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.83■□□□□ 0.77
CTDNEP1O95476 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CTDNEP1O95476 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.83■□□□□ 0.77
CTDNEP1O95476 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CTDNEP1O95476 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms