Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.01■□□□□ 0.15
PRKNO60260 MIR1199-201ENST00000621445 119 ntBASIC16.01■□□□□ 0.15
PRKNO60260 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
PRKNO60260 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PRKNO60260 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.01■□□□□ 0.15
PRKNO60260 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.01■□□□□ 0.15
PRKNO60260 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PRKNO60260 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.01■□□□□ 0.15
PRKNO60260 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PRKNO60260 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PRKNO60260 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PRKNO60260 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
PRKNO60260 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
PRKNO60260 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PRKNO60260 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
PRKNO60260 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.01■□□□□ 0.15
PRKNO60260 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
PRKNO60260 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PRKNO60260 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16■□□□□ 0.15
PRKNO60260 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16■□□□□ 0.15
PRKNO60260 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
PRKNO60260 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PRKNO60260 AL590787.1-201ENST00000568856 1315 ntBASIC16■□□□□ 0.15
PRKNO60260 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PRKNO60260 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16■□□□□ 0.15
PRKNO60260 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
PRKNO60260 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PRKNO60260 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
PRKNO60260 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
PRKNO60260 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16■□□□□ 0.15
PRKNO60260 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
PRKNO60260 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16■□□□□ 0.15
PRKNO60260 SLC25A1P3-201ENST00000395415 828 ntBASIC16■□□□□ 0.15
PRKNO60260 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16■□□□□ 0.15
PRKNO60260 AC145285.3-201ENST00000564603 959 ntBASIC16■□□□□ 0.15
PRKNO60260 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PRKNO60260 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16■□□□□ 0.15
PRKNO60260 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
PRKNO60260 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
PRKNO60260 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16■□□□□ 0.15
PRKNO60260 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
PRKNO60260 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16■□□□□ 0.15
PRKNO60260 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
PRKNO60260 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16■□□□□ 0.15
PRKNO60260 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16■□□□□ 0.15
PRKNO60260 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16■□□□□ 0.15
PRKNO60260 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKNO60260 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.99■□□□□ 0.15
PRKNO60260 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKNO60260 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
PRKNO60260 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKNO60260 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKNO60260 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKNO60260 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKNO60260 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
PRKNO60260 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.99■□□□□ 0.15
PRKNO60260 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKNO60260 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKNO60260 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKNO60260 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKNO60260 MIR574-201ENST00000385209 96 ntBASIC15.99■□□□□ 0.15
PRKNO60260 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
PRKNO60260 PTCHD3P3-201ENST00000403073 906 ntBASIC15.99■□□□□ 0.15
PRKNO60260 AC009947.1-201ENST00000444350 727 ntBASIC15.99■□□□□ 0.15
PRKNO60260 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKNO60260 RPS15P9-201ENST00000494093 319 ntBASIC15.99■□□□□ 0.15
PRKNO60260 Z83851.2-201ENST00000609564 659 ntBASIC15.99■□□□□ 0.15
PRKNO60260 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
PRKNO60260 AC005593.1-201ENST00000624894 515 ntBASIC15.99■□□□□ 0.15
PRKNO60260 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PRKNO60260 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKNO60260 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC15.99■□□□□ 0.15
PRKNO60260 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.99■□□□□ 0.15
PRKNO60260 AC092053.1-201ENST00000605787 1936 ntBASIC15.99■□□□□ 0.15
PRKNO60260 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.99■□□□□ 0.15
PRKNO60260 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
PRKNO60260 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PRKNO60260 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.99■□□□□ 0.15
PRKNO60260 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC15.99■□□□□ 0.15
PRKNO60260 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PRKNO60260 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PRKNO60260 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PRKNO60260 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.98■□□□□ 0.15
PRKNO60260 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.98■□□□□ 0.15
PRKNO60260 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PRKNO60260 GPR89P-201ENST00000407924 1495 ntBASIC15.98■□□□□ 0.15
PRKNO60260 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
PRKNO60260 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PRKNO60260 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
PRKNO60260 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PRKNO60260 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC15.98■□□□□ 0.15
PRKNO60260 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC15.98■□□□□ 0.15
PRKNO60260 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PRKNO60260 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.98■□□□□ 0.15
PRKNO60260 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PRKNO60260 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
PRKNO60260 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PRKNO60260 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC15.98■□□□□ 0.15
PRKNO60260 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.98■□□□□ 0.15
PRKNO60260 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms