Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
SGCEO43556 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SGCEO43556 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SGCEO43556 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
SGCEO43556 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.27■□□□□ 0.03
SGCEO43556 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.27■□□□□ 0.03
SGCEO43556 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
SGCEO43556 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.26■□□□□ 0.03
SGCEO43556 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 AC103702.1-201ENST00000548801 2630 ntBASIC15.26■□□□□ 0.03
SGCEO43556 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC15.26■□□□□ 0.03
SGCEO43556 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
SGCEO43556 AC003669.1-201ENST00000334569 611 ntBASIC15.26■□□□□ 0.03
SGCEO43556 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.26■□□□□ 0.03
SGCEO43556 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.26■□□□□ 0.03
SGCEO43556 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC15.26■□□□□ 0.03
SGCEO43556 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC15.26■□□□□ 0.03
SGCEO43556 STK19B-204ENST00000512515 211 ntBASIC15.26■□□□□ 0.03
SGCEO43556 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC15.26■□□□□ 0.03
SGCEO43556 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.26■□□□□ 0.03
SGCEO43556 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC15.26■□□□□ 0.03
SGCEO43556 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SGCEO43556 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SGCEO43556 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC15.26■□□□□ 0.03
SGCEO43556 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SGCEO43556 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SGCEO43556 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.25■□□□□ 0.03
SGCEO43556 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SGCEO43556 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SGCEO43556 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SGCEO43556 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SGCEO43556 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SGCEO43556 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC15.25■□□□□ 0.03
SGCEO43556 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.25■□□□□ 0.03
SGCEO43556 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SGCEO43556 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.25■□□□□ 0.03
SGCEO43556 KLF4P1-201ENST00000412782 1185 ntBASIC15.25■□□□□ 0.03
SGCEO43556 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SGCEO43556 NUS1P2-201ENST00000417358 873 ntBASIC15.25■□□□□ 0.03
SGCEO43556 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SGCEO43556 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC15.25■□□□□ 0.03
SGCEO43556 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC15.25■□□□□ 0.03
SGCEO43556 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.25■□□□□ 0.03
SGCEO43556 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
SGCEO43556 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC15.25■□□□□ 0.03
SGCEO43556 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.25■□□□□ 0.03
SGCEO43556 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC15.25■□□□□ 0.03
SGCEO43556 AD001527.2-201ENST00000622994 785 ntBASIC15.25■□□□□ 0.03
SGCEO43556 CCNC-219ENST00000627680 896 ntTSL 5 BASIC15.25■□□□□ 0.03
SGCEO43556 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
SGCEO43556 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SGCEO43556 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SGCEO43556 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SGCEO43556 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
SGCEO43556 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SGCEO43556 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SGCEO43556 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SGCEO43556 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SGCEO43556 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SGCEO43556 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SGCEO43556 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SGCEO43556 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.24■□□□□ 0.03
SGCEO43556 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SGCEO43556 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SGCEO43556 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SGCEO43556 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SGCEO43556 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SGCEO43556 FUOM-202ENST00000368551 628 ntTSL 3 BASIC15.24■□□□□ 0.03
SGCEO43556 SRP19-202ENST00000445150 833 ntTSL 2 BASIC15.24■□□□□ 0.03
SGCEO43556 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC15.24■□□□□ 0.03
SGCEO43556 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC15.24■□□□□ 0.03
SGCEO43556 COX5A-202ENST00000562233 441 ntTSL 3 BASIC15.24■□□□□ 0.03
SGCEO43556 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC15.24■□□□□ 0.03
SGCEO43556 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.24■□□□□ 0.03
SGCEO43556 AC138894.3-201ENST00000603787 634 ntBASIC15.24■□□□□ 0.03
SGCEO43556 AC073592.5-201ENST00000624854 528 ntBASIC15.24■□□□□ 0.03
SGCEO43556 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC15.24■□□□□ 0.03
SGCEO43556 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SGCEO43556 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms