Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CLDN3O15551 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.79■□□□□ 0.6
CLDN3O15551 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN3O15551 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN3O15551 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN3O15551 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CLDN3O15551 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLDN3O15551 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLDN3O15551 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLDN3O15551 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLDN3O15551 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLDN3O15551 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.78■□□□□ 0.6
CLDN3O15551 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.78■□□□□ 0.6
CLDN3O15551 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLDN3O15551 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLDN3O15551 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLDN3O15551 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLDN3O15551 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CLDN3O15551 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLDN3O15551 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.78■□□□□ 0.6
CLDN3O15551 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CLDN3O15551 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLDN3O15551 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CLDN3O15551 AP000347.1-202ENST00000435868 847 ntBASIC18.78■□□□□ 0.6
CLDN3O15551 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.78■□□□□ 0.6
CLDN3O15551 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.78■□□□□ 0.6
CLDN3O15551 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC18.78■□□□□ 0.6
CLDN3O15551 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.78■□□□□ 0.6
CLDN3O15551 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CLDN3O15551 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CLDN3O15551 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLDN3O15551 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLDN3O15551 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLDN3O15551 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CLDN3O15551 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLDN3O15551 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.78■□□□□ 0.6
CLDN3O15551 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CLDN3O15551 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLDN3O15551 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLDN3O15551 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLDN3O15551 PI4KAP1-204ENST00000612579 1703 ntBASIC18.77■□□□□ 0.6
CLDN3O15551 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.77■□□□□ 0.6
CLDN3O15551 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CLDN3O15551 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.77■□□□□ 0.6
CLDN3O15551 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.77■□□□□ 0.6
CLDN3O15551 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.77■□□□□ 0.6
CLDN3O15551 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
CLDN3O15551 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLDN3O15551 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CLDN3O15551 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLDN3O15551 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLDN3O15551 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLDN3O15551 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLDN3O15551 AC009947.1-201ENST00000444350 727 ntBASIC18.77■□□□□ 0.6
CLDN3O15551 IGHV3-65-201ENST00000523210 341 ntBASIC18.77■□□□□ 0.6
CLDN3O15551 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.77■□□□□ 0.6
CLDN3O15551 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.77■□□□□ 0.6
CLDN3O15551 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.77■□□□□ 0.6
CLDN3O15551 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
CLDN3O15551 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.59
CLDN3O15551 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.77■□□□□ 0.59
CLDN3O15551 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CLDN3O15551 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLDN3O15551 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLDN3O15551 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLDN3O15551 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.76■□□□□ 0.59
CLDN3O15551 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.76■□□□□ 0.59
CLDN3O15551 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLDN3O15551 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.76■□□□□ 0.59
CLDN3O15551 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
CLDN3O15551 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLDN3O15551 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CLDN3O15551 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLDN3O15551 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLDN3O15551 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.76■□□□□ 0.59
CLDN3O15551 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.76■□□□□ 0.59
CLDN3O15551 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.76■□□□□ 0.59
CLDN3O15551 AC108751.1-201ENST00000490852 363 ntBASIC18.76■□□□□ 0.59
CLDN3O15551 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.76■□□□□ 0.59
CLDN3O15551 AC034105.1-201ENST00000563488 319 ntBASIC18.76■□□□□ 0.59
CLDN3O15551 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.76■□□□□ 0.59
CLDN3O15551 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLDN3O15551 GGTLC5P-201ENST00000617623 998 ntBASIC18.76■□□□□ 0.59
CLDN3O15551 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
CLDN3O15551 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLDN3O15551 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
CLDN3O15551 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLDN3O15551 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.76■□□□□ 0.59
CLDN3O15551 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLDN3O15551 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLDN3O15551 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
CLDN3O15551 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLDN3O15551 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CLDN3O15551 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLDN3O15551 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
CLDN3O15551 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CLDN3O15551 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.75■□□□□ 0.59
CLDN3O15551 PKD1P1-201ENST00000458669 6805 ntBASIC18.75■□□□□ 0.59
CLDN3O15551 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CLDN3O15551 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms