Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 AL035456.1-201ENST00000456064 1369 ntBASIC13.15□□□□□ -0.3
COL6A5A8TX70 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
COL6A5A8TX70 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
COL6A5A8TX70 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.15□□□□□ -0.31
COL6A5A8TX70 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC13.14□□□□□ -0.31
COL6A5A8TX70 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 AL355334.1-201ENST00000417713 215 ntBASIC13.14□□□□□ -0.31
COL6A5A8TX70 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC13.14□□□□□ -0.31
COL6A5A8TX70 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
COL6A5A8TX70 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC13.14□□□□□ -0.31
COL6A5A8TX70 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC13.14□□□□□ -0.31
COL6A5A8TX70 SLC25A47P1-201ENST00000531577 414 ntBASIC13.14□□□□□ -0.31
COL6A5A8TX70 C2orf69P2-201ENST00000562032 1123 ntBASIC13.14□□□□□ -0.31
COL6A5A8TX70 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC13.14□□□□□ -0.31
COL6A5A8TX70 AL365330.1-201ENST00000607459 531 ntBASIC13.14□□□□□ -0.31
COL6A5A8TX70 TEX48-202ENST00000612244 662 ntTSL 3 BASIC13.14□□□□□ -0.31
COL6A5A8TX70 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC13.14□□□□□ -0.31
COL6A5A8TX70 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 RNU1-129P-201ENST00000384064 167 ntBASIC13.14□□□□□ -0.31
COL6A5A8TX70 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 AC005229.1-201ENST00000392885 409 ntBASIC13.14□□□□□ -0.31
COL6A5A8TX70 KLF2P4-201ENST00000451959 1225 ntBASIC13.14□□□□□ -0.31
COL6A5A8TX70 RAB35-202ENST00000534951 939 ntTSL 2 BASIC13.14□□□□□ -0.31
COL6A5A8TX70 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 BANF1P1-201ENST00000553684 263 ntBASIC13.14□□□□□ -0.31
COL6A5A8TX70 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC13.14□□□□□ -0.31
COL6A5A8TX70 U1.21-201ENST00000580816 167 ntBASIC13.14□□□□□ -0.31
COL6A5A8TX70 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
COL6A5A8TX70 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.14□□□□□ -0.31
COL6A5A8TX70 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL6A5A8TX70 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL6A5A8TX70 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL6A5A8TX70 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL6A5A8TX70 AL079307.3-201ENST00000556114 283 ntBASIC13.13□□□□□ -0.31
COL6A5A8TX70 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL6A5A8TX70 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL6A5A8TX70 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 HNRNPRP1-201ENST00000453465 1695 ntBASIC13.13□□□□□ -0.31
COL6A5A8TX70 AL135999.2-201ENST00000622438 1686 ntBASIC13.13□□□□□ -0.31
COL6A5A8TX70 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL6A5A8TX70 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL6A5A8TX70 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL6A5A8TX70 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL6A5A8TX70 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL6A5A8TX70 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 AC006033.1-201ENST00000440505 426 ntBASIC13.13□□□□□ -0.31
COL6A5A8TX70 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL6A5A8TX70 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC13.13□□□□□ -0.31
COL6A5A8TX70 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms