Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS9D1Q9Y2B5 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
VPS9D1Q9Y2B5 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.14■□□□□ 0.33
VPS9D1Q9Y2B5 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS9D1Q9Y2B5 AC106820.2-201ENST00000563775 3264 ntBASIC17.14■□□□□ 0.33
VPS9D1Q9Y2B5 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.14■□□□□ 0.33
VPS9D1Q9Y2B5 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS9D1Q9Y2B5 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS9D1Q9Y2B5 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS9D1Q9Y2B5 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.14■□□□□ 0.33
VPS9D1Q9Y2B5 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS9D1Q9Y2B5 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 PRYP5-201ENST00000451909 266 ntBASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 FOSL1P1-201ENST00000511041 816 ntBASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 AC106795.1-205ENST00000512851 1056 ntBASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 AC080080.1-201ENST00000625121 2420 ntBASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS9D1Q9Y2B5 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 AC148477.5-201ENST00000625164 1645 ntBASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 AC012313.1-201ENST00000593393 3059 ntBASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 AC132008.2-207ENST00000454517 770 ntBASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 LINC01711-201ENST00000598340 967 ntBASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 AL139288.1-201ENST00000623748 933 ntBASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.12■□□□□ 0.33
VPS9D1Q9Y2B5 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 AC060834.1-201ENST00000443027 2032 ntBASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms