Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL20A1Q9P218 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL20A1Q9P218 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
COL20A1Q9P218 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.34■□□□□ 0.69
COL20A1Q9P218 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.34■□□□□ 0.69
COL20A1Q9P218 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.34■□□□□ 0.69
COL20A1Q9P218 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL20A1Q9P218 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL20A1Q9P218 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL20A1Q9P218 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
COL20A1Q9P218 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL20A1Q9P218 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL20A1Q9P218 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
COL20A1Q9P218 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL20A1Q9P218 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL20A1Q9P218 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL20A1Q9P218 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
COL20A1Q9P218 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL20A1Q9P218 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
COL20A1Q9P218 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.33■□□□□ 0.69
COL20A1Q9P218 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL20A1Q9P218 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.33■□□□□ 0.69
COL20A1Q9P218 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL20A1Q9P218 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL20A1Q9P218 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
COL20A1Q9P218 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
COL20A1Q9P218 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.33■□□□□ 0.68
COL20A1Q9P218 AC140658.5-201ENST00000438532 169 ntBASIC19.33■□□□□ 0.68
COL20A1Q9P218 METTL21AP1-201ENST00000438852 635 ntBASIC19.33■□□□□ 0.68
COL20A1Q9P218 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC19.33■□□□□ 0.68
COL20A1Q9P218 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.33■□□□□ 0.68
COL20A1Q9P218 AC027796.2-201ENST00000575326 344 ntBASIC19.33■□□□□ 0.68
COL20A1Q9P218 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.33■□□□□ 0.68
COL20A1Q9P218 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.33■□□□□ 0.68
COL20A1Q9P218 AC105339.1-204ENST00000636249 355 ntBASIC19.33■□□□□ 0.68
COL20A1Q9P218 AL645728.2-201ENST00000641974 660 ntBASIC19.33■□□□□ 0.68
COL20A1Q9P218 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL20A1Q9P218 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL20A1Q9P218 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL20A1Q9P218 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL20A1Q9P218 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL20A1Q9P218 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL20A1Q9P218 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL20A1Q9P218 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL20A1Q9P218 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL20A1Q9P218 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL20A1Q9P218 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 AC004461.1-201ENST00000412461 403 ntBASIC19.32■□□□□ 0.68
COL20A1Q9P218 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.32■□□□□ 0.68
COL20A1Q9P218 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL20A1Q9P218 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL20A1Q9P218 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 AC005412.3-201ENST00000580309 715 ntBASIC19.31■□□□□ 0.68
COL20A1Q9P218 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms