Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
NDE1Q9NXR1 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.72■□□□□ 0.27
NDE1Q9NXR1 AC092053.1-201ENST00000605787 1936 ntBASIC16.72■□□□□ 0.27
NDE1Q9NXR1 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
NDE1Q9NXR1 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
NDE1Q9NXR1 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NDE1Q9NXR1 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.72■□□□□ 0.27
NDE1Q9NXR1 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NDE1Q9NXR1 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
NDE1Q9NXR1 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
NDE1Q9NXR1 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 AC092338.2-201ENST00000568827 1415 ntBASIC16.71■□□□□ 0.27
NDE1Q9NXR1 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 SLC25A1P3-201ENST00000395415 828 ntBASIC16.71■□□□□ 0.27
NDE1Q9NXR1 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 MIR3917-201ENST00000580971 93 ntBASIC16.71■□□□□ 0.27
NDE1Q9NXR1 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 AC068587.6-202ENST00000641839 5619 ntBASIC16.71■□□□□ 0.27
NDE1Q9NXR1 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NDE1Q9NXR1 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
NDE1Q9NXR1 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
NDE1Q9NXR1 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
NDE1Q9NXR1 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.26
NDE1Q9NXR1 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.71■□□□□ 0.26
NDE1Q9NXR1 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 KRT89P-201ENST00000620027 1478 ntBASIC16.7■□□□□ 0.26
NDE1Q9NXR1 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
NDE1Q9NXR1 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
NDE1Q9NXR1 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NDE1Q9NXR1 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.69■□□□□ 0.26
NDE1Q9NXR1 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NDE1Q9NXR1 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms