Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 MIR7706-201ENST00000613747 67 ntBASIC18.34■□□□□ 0.53
CISHQ9NSE2 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.34■□□□□ 0.53
CISHQ9NSE2 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CISHQ9NSE2 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CISHQ9NSE2 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.34■□□□□ 0.53
CISHQ9NSE2 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CISHQ9NSE2 AP002414.3-201ENST00000589352 1468 ntBASIC18.33■□□□□ 0.53
CISHQ9NSE2 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CISHQ9NSE2 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CISHQ9NSE2 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.53
CISHQ9NSE2 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CISHQ9NSE2 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.33■□□□□ 0.53
CISHQ9NSE2 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.33■□□□□ 0.53
CISHQ9NSE2 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CISHQ9NSE2 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CISHQ9NSE2 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
CISHQ9NSE2 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CISHQ9NSE2 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CISHQ9NSE2 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.33■□□□□ 0.52
CISHQ9NSE2 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.33■□□□□ 0.52
CISHQ9NSE2 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CISHQ9NSE2 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.33■□□□□ 0.52
CISHQ9NSE2 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.33■□□□□ 0.52
CISHQ9NSE2 PTCHD3P3-201ENST00000403073 906 ntBASIC18.33■□□□□ 0.52
CISHQ9NSE2 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.33■□□□□ 0.52
CISHQ9NSE2 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.33■□□□□ 0.52
CISHQ9NSE2 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CISHQ9NSE2 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CISHQ9NSE2 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.33■□□□□ 0.52
CISHQ9NSE2 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CISHQ9NSE2 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CISHQ9NSE2 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CISHQ9NSE2 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CISHQ9NSE2 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CISHQ9NSE2 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CISHQ9NSE2 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CISHQ9NSE2 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CISHQ9NSE2 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.33■□□□□ 0.52
CISHQ9NSE2 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CISHQ9NSE2 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CISHQ9NSE2 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CISHQ9NSE2 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CISHQ9NSE2 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CISHQ9NSE2 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.33■□□□□ 0.52
CISHQ9NSE2 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CISHQ9NSE2 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CISHQ9NSE2 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CISHQ9NSE2 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CISHQ9NSE2 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CISHQ9NSE2 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 HLA-A-201ENST00000376802 1334 ntBASIC18.32■□□□□ 0.52
CISHQ9NSE2 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CISHQ9NSE2 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CISHQ9NSE2 AC136632.2-201ENST00000512891 861 ntBASIC18.32■□□□□ 0.52
CISHQ9NSE2 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 AC124947.2-201ENST00000547118 1133 ntBASIC18.32■□□□□ 0.52
CISHQ9NSE2 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 AP001005.1-201ENST00000571755 1248 ntBASIC18.32■□□□□ 0.52
CISHQ9NSE2 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CISHQ9NSE2 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CISHQ9NSE2 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CISHQ9NSE2 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.32■□□□□ 0.52
CISHQ9NSE2 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CISHQ9NSE2 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CISHQ9NSE2 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CISHQ9NSE2 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CISHQ9NSE2 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CISHQ9NSE2 AC243591.1-201ENST00000452967 1364 ntBASIC18.31■□□□□ 0.52
CISHQ9NSE2 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CISHQ9NSE2 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CISHQ9NSE2 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms