Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VTA1Q9NP79 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VTA1Q9NP79 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VTA1Q9NP79 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC19.13■□□□□ 0.65
VTA1Q9NP79 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC19.13■□□□□ 0.65
VTA1Q9NP79 AL512356.2-201ENST00000546955 174 ntBASIC19.13■□□□□ 0.65
VTA1Q9NP79 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
VTA1Q9NP79 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VTA1Q9NP79 Z92544.3-201ENST00000624747 417 ntBASIC19.13■□□□□ 0.65
VTA1Q9NP79 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VTA1Q9NP79 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
VTA1Q9NP79 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VTA1Q9NP79 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VTA1Q9NP79 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VTA1Q9NP79 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VTA1Q9NP79 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
VTA1Q9NP79 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VTA1Q9NP79 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VTA1Q9NP79 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VTA1Q9NP79 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VTA1Q9NP79 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VTA1Q9NP79 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
VTA1Q9NP79 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.12■□□□□ 0.65
VTA1Q9NP79 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.12■□□□□ 0.65
VTA1Q9NP79 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.12■□□□□ 0.65
VTA1Q9NP79 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.12■□□□□ 0.65
VTA1Q9NP79 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VTA1Q9NP79 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VTA1Q9NP79 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VTA1Q9NP79 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.12■□□□□ 0.65
VTA1Q9NP79 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VTA1Q9NP79 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC19.12■□□□□ 0.65
VTA1Q9NP79 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VTA1Q9NP79 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VTA1Q9NP79 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VTA1Q9NP79 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.12■□□□□ 0.65
VTA1Q9NP79 AC091167.2-201ENST00000579581 588 ntBASIC19.12■□□□□ 0.65
VTA1Q9NP79 AC005498.2-205ENST00000593218 784 ntBASIC19.12■□□□□ 0.65
VTA1Q9NP79 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VTA1Q9NP79 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.12■□□□□ 0.65
VTA1Q9NP79 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
VTA1Q9NP79 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
VTA1Q9NP79 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VTA1Q9NP79 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.11■□□□□ 0.65
VTA1Q9NP79 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.11■□□□□ 0.65
VTA1Q9NP79 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VTA1Q9NP79 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
VTA1Q9NP79 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
VTA1Q9NP79 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VTA1Q9NP79 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VTA1Q9NP79 AC092474.2-201ENST00000424288 719 ntBASIC19.11■□□□□ 0.65
VTA1Q9NP79 FAM58DP-201ENST00000428076 619 ntBASIC19.11■□□□□ 0.65
VTA1Q9NP79 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VTA1Q9NP79 SPCS2P4-201ENST00000436160 681 ntBASIC19.11■□□□□ 0.65
VTA1Q9NP79 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VTA1Q9NP79 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC19.11■□□□□ 0.65
VTA1Q9NP79 CNN2P2-201ENST00000443536 909 ntBASIC19.11■□□□□ 0.65
VTA1Q9NP79 CNN2P3-201ENST00000450201 906 ntBASIC19.11■□□□□ 0.65
VTA1Q9NP79 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VTA1Q9NP79 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VTA1Q9NP79 VPS29-207ENST00000549970 818 ntTSL 3 BASIC19.11■□□□□ 0.65
VTA1Q9NP79 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC19.11■□□□□ 0.65
VTA1Q9NP79 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VTA1Q9NP79 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC19.11■□□□□ 0.65
VTA1Q9NP79 AL136317.3-201ENST00000618497 906 ntBASIC19.11■□□□□ 0.65
VTA1Q9NP79 AP001059.3-201ENST00000619053 235 ntBASIC19.11■□□□□ 0.65
VTA1Q9NP79 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
VTA1Q9NP79 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.11■□□□□ 0.65
VTA1Q9NP79 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
VTA1Q9NP79 AC026471.1-201ENST00000564629 3026 ntBASIC19.11■□□□□ 0.65
VTA1Q9NP79 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
VTA1Q9NP79 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.11■□□□□ 0.65
VTA1Q9NP79 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
VTA1Q9NP79 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC19.1■□□□□ 0.65
VTA1Q9NP79 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
VTA1Q9NP79 AC016396.2-201ENST00000562575 1417 ntBASIC19.1■□□□□ 0.65
VTA1Q9NP79 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VTA1Q9NP79 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VTA1Q9NP79 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
VTA1Q9NP79 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
VTA1Q9NP79 TOP3BP1-201ENST00000420768 1380 ntBASIC19.1■□□□□ 0.65
VTA1Q9NP79 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VTA1Q9NP79 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VTA1Q9NP79 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VTA1Q9NP79 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VTA1Q9NP79 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC19.1■□□□□ 0.65
VTA1Q9NP79 RPL30-202ENST00000396070 440 ntTSL 2 BASIC19.1■□□□□ 0.65
VTA1Q9NP79 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VTA1Q9NP79 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VTA1Q9NP79 MTRF1LP2-201ENST00000506027 1122 ntBASIC19.1■□□□□ 0.65
VTA1Q9NP79 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VTA1Q9NP79 KRT8P23-201ENST00000560090 1207 ntBASIC19.1■□□□□ 0.65
VTA1Q9NP79 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC19.1■□□□□ 0.65
VTA1Q9NP79 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VTA1Q9NP79 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VTA1Q9NP79 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.1■□□□□ 0.65
VTA1Q9NP79 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VTA1Q9NP79 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.1■□□□□ 0.65
VTA1Q9NP79 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VTA1Q9NP79 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms