Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 CNN2P11-201ENST00000429351 262 ntBASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 CEND1P1-201ENST00000451006 455 ntBASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 AC096734.2-201ENST00000562054 433 ntBASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 PDPK2P-202ENST00000562415 1191 ntBASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 BCAR1-209ENST00000546196 1340 ntBASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 OR7E47P-204ENST00000575924 449 ntBASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TM9SF3Q9HD45 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.21■□□□□ 0.34
TM9SF3Q9HD45 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.21■□□□□ 0.34
TM9SF3Q9HD45 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
TM9SF3Q9HD45 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 MYCLP1-201ENST00000372451 1075 ntBASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 KRT19P2-202ENST00000557173 1012 ntBASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TM9SF3Q9HD45 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms