Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 FLJ38576-201ENST00000623820 2459 ntBASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 BX276092.7-203ENST00000637198 1536 ntBASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 RASA4DP-201ENST00000460726 1199 ntBASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 CD81-212ENST00000526072 1172 ntTSL 5 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 AC008741.2-201ENST00000612792 3115 ntBASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 KRT89P-201ENST00000620027 1478 ntBASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.88□□□□□ -0.03
CHMP1AQ9HD42 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 FAM8A6P-201ENST00000407496 1135 ntBASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 AL391807.1-203ENST00000604392 2365 ntBASIC14.87□□□□□ -0.03
CHMP1AQ9HD42 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms