Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 CLEC4GP1-201ENST00000596555 870 ntBASIC17.79■□□□□ 0.44
PCDH9Q9HC56 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDH9Q9HC56 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.78■□□□□ 0.44
PCDH9Q9HC56 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 AC092068.3-201ENST00000587894 2016 ntBASIC17.78■□□□□ 0.44
PCDH9Q9HC56 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 KRT16P4-201ENST00000453883 522 ntBASIC17.78■□□□□ 0.44
PCDH9Q9HC56 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 MIR5100-201ENST00000579544 119 ntBASIC17.78■□□□□ 0.44
PCDH9Q9HC56 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 AC078925.2-201ENST00000624013 1973 ntBASIC17.78■□□□□ 0.44
PCDH9Q9HC56 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDH9Q9HC56 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 AL591684.3-201ENST00000605187 298 ntBASIC17.77■□□□□ 0.44
PCDH9Q9HC56 AL121772.3-201ENST00000610840 674 ntBASIC17.77■□□□□ 0.44
PCDH9Q9HC56 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 AC012313.10-201ENST00000623509 926 ntBASIC17.77■□□□□ 0.44
PCDH9Q9HC56 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 PCDHB19P-201ENST00000570871 2371 ntBASIC17.77■□□□□ 0.44
PCDH9Q9HC56 AC009336.1-201ENST00000608941 1553 ntBASIC17.77■□□□□ 0.44
PCDH9Q9HC56 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
PCDH9Q9HC56 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
PCDH9Q9HC56 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms