Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.68■□□□□ 0.74
USP28Q96RU2 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.68■□□□□ 0.74
USP28Q96RU2 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP28Q96RU2 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP28Q96RU2 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP28Q96RU2 AC079328.2-201ENST00000561241 3354 ntBASIC19.68■□□□□ 0.74
USP28Q96RU2 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
USP28Q96RU2 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.68■□□□□ 0.74
USP28Q96RU2 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP28Q96RU2 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP28Q96RU2 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP28Q96RU2 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19.68■□□□□ 0.74
USP28Q96RU2 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP28Q96RU2 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.68■□□□□ 0.74
USP28Q96RU2 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.68■□□□□ 0.74
USP28Q96RU2 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP28Q96RU2 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
USP28Q96RU2 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
USP28Q96RU2 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
USP28Q96RU2 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP28Q96RU2 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP28Q96RU2 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP28Q96RU2 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
USP28Q96RU2 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP28Q96RU2 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP28Q96RU2 AC004817.3-201ENST00000602957 2129 ntBASIC19.67■□□□□ 0.74
USP28Q96RU2 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP28Q96RU2 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP28Q96RU2 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.67■□□□□ 0.74
USP28Q96RU2 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP28Q96RU2 AL603756.1-201ENST00000606511 2163 ntBASIC19.67■□□□□ 0.74
USP28Q96RU2 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
USP28Q96RU2 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP28Q96RU2 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.67■□□□□ 0.74
USP28Q96RU2 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP28Q96RU2 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP28Q96RU2 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP28Q96RU2 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
USP28Q96RU2 AP000867.3-201ENST00000524675 377 ntBASIC19.67■□□□□ 0.74
USP28Q96RU2 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.67■□□□□ 0.74
USP28Q96RU2 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.67■□□□□ 0.74
USP28Q96RU2 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.67■□□□□ 0.74
USP28Q96RU2 AL358472.4-201ENST00000633140 710 ntBASIC19.67■□□□□ 0.74
USP28Q96RU2 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.67■□□□□ 0.74
USP28Q96RU2 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
USP28Q96RU2 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
USP28Q96RU2 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
USP28Q96RU2 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.67■□□□□ 0.74
USP28Q96RU2 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
USP28Q96RU2 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.66■□□□□ 0.74
USP28Q96RU2 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
USP28Q96RU2 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
USP28Q96RU2 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
USP28Q96RU2 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
USP28Q96RU2 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
USP28Q96RU2 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
USP28Q96RU2 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.66■□□□□ 0.74
USP28Q96RU2 SPDYE21P-201ENST00000413323 827 ntBASIC19.66■□□□□ 0.74
USP28Q96RU2 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.66■□□□□ 0.74
USP28Q96RU2 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
USP28Q96RU2 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.66■□□□□ 0.74
USP28Q96RU2 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.66■□□□□ 0.74
USP28Q96RU2 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.66■□□□□ 0.74
USP28Q96RU2 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 AC092329.2-201ENST00000598402 547 ntBASIC19.66■□□□□ 0.74
USP28Q96RU2 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.66■□□□□ 0.74
USP28Q96RU2 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC19.66■□□□□ 0.74
USP28Q96RU2 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
USP28Q96RU2 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.66■□□□□ 0.74
USP28Q96RU2 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.66■□□□□ 0.74
USP28Q96RU2 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
USP28Q96RU2 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.66■□□□□ 0.74
USP28Q96RU2 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
USP28Q96RU2 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.66■□□□□ 0.74
USP28Q96RU2 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP28Q96RU2 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.66■□□□□ 0.74
USP28Q96RU2 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
USP28Q96RU2 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP28Q96RU2 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP28Q96RU2 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.65■□□□□ 0.74
USP28Q96RU2 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP28Q96RU2 AL645728.1-201ENST00000366221 2101 ntBASIC19.65■□□□□ 0.74
USP28Q96RU2 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
USP28Q96RU2 AL020989.1-201ENST00000422979 469 ntBASIC19.65■□□□□ 0.74
USP28Q96RU2 AC104819.1-201ENST00000504587 486 ntBASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms