Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 AC021087.4-201ENST00000563761 564 ntBASIC13.32□□□□□ -0.28
CCDC140Q96MF4 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 SDCCAG3P1-201ENST00000589292 1150 ntBASIC13.32□□□□□ -0.28
CCDC140Q96MF4 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 AL589182.2-201ENST00000619332 1049 ntBASIC13.32□□□□□ -0.28
CCDC140Q96MF4 TP73-AS1-207ENST00000624167 988 ntBASIC13.32□□□□□ -0.28
CCDC140Q96MF4 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 FRMD8P1-201ENST00000440433 1524 ntBASIC13.32□□□□□ -0.28
CCDC140Q96MF4 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 AC092068.3-201ENST00000587894 2016 ntBASIC13.32□□□□□ -0.28
CCDC140Q96MF4 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 PKD1P1-201ENST00000458669 6805 ntBASIC13.31□□□□□ -0.28
CCDC140Q96MF4 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 AL450487.1-201ENST00000426799 995 ntBASIC13.31□□□□□ -0.28
CCDC140Q96MF4 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 AL139424.1-201ENST00000607572 797 ntBASIC13.31□□□□□ -0.28
CCDC140Q96MF4 IRF5-214ENST00000613821 595 ntTSL 5 BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC140Q96MF4 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 AC009053.2-201ENST00000563701 2365 ntBASIC13.3□□□□□ -0.28
CCDC140Q96MF4 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 RAB17-203ENST00000409576 466 ntTSL 3 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 AC139887.3-201ENST00000568585 713 ntBASIC13.3□□□□□ -0.28
CCDC140Q96MF4 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 RN7SL510P-201ENST00000581311 263 ntBASIC13.3□□□□□ -0.28
CCDC140Q96MF4 PNMT-203ENST00000581428 677 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms