Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 SPCS2P4-201ENST00000436160 681 ntBASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 IGHV3-62-201ENST00000520057 340 ntBASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 AL161645.1-201ENST00000622716 1255 ntBASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SNRNP40Q96DI7 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 FO538757.1-201ENST00000623083 1397 ntBASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 MIR661-201ENST00000384842 89 ntBASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 UGT1A2P-201ENST00000454886 866 ntBASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 AC140878.1-201ENST00000565277 250 ntBASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 AC012645.4-201ENST00000610691 1061 ntBASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SNRNP40Q96DI7 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SNRNP40Q96DI7 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SNRNP40Q96DI7 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SNRNP40Q96DI7 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
SNRNP40Q96DI7 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC15.39■□□□□ 0.05
SNRNP40Q96DI7 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SNRNP40Q96DI7 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SNRNP40Q96DI7 REXO1L11P-201ENST00000620964 1927 ntBASIC15.39■□□□□ 0.05
SNRNP40Q96DI7 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SNRNP40Q96DI7 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
SNRNP40Q96DI7 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SNRNP40Q96DI7 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SNRNP40Q96DI7 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SNRNP40Q96DI7 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms