Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 WASH4P-201ENST00000564273 1246 ntBASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 RN7SL219P-201ENST00000582872 296 ntBASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SMC1BQ8NDV3 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 GNAQP1-201ENST00000444815 1067 ntBASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 AC004840.1-201ENST00000636359 365 ntBASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SMC1BQ8NDV3 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 RN7SL837P-201ENST00000463010 287 ntBASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 MIR6869-201ENST00000619434 62 ntBASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC1BQ8NDV3 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 TPI1-206ENST00000488464 791 ntTSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms