Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC116Q8IYX3 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC116Q8IYX3 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC116Q8IYX3 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 AC017007.3-201ENST00000479865 435 ntBASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 CLEC4GP1-201ENST00000596555 870 ntBASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 SIGLEC16-201ENST00000599858 1437 ntBASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC116Q8IYX3 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 AC097637.2-201ENST00000624096 1997 ntBASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 DCD-201ENST00000293371 645 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 AC106795.1-205ENST00000512851 1056 ntBASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 MTDHP3-201ENST00000594186 672 ntBASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CCDC116Q8IYX3 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 BX005266.1-201ENST00000473402 457 ntBASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 NKAPP1-205ENST00000585790 367 ntBASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 LINC01711-201ENST00000598340 967 ntBASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 AC073592.4-201ENST00000623827 446 ntBASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms