Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
VRK3Q8IV63 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VRK3Q8IV63 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VRK3Q8IV63 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
VRK3Q8IV63 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VRK3Q8IV63 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VRK3Q8IV63 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VRK3Q8IV63 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VRK3Q8IV63 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.81■□□□□ 0.28
VRK3Q8IV63 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VRK3Q8IV63 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VRK3Q8IV63 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.81■□□□□ 0.28
VRK3Q8IV63 PTCHD3P3-201ENST00000403073 906 ntBASIC16.81■□□□□ 0.28
VRK3Q8IV63 AL031284.1-201ENST00000419297 478 ntBASIC16.81■□□□□ 0.28
VRK3Q8IV63 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.81■□□□□ 0.28
VRK3Q8IV63 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VRK3Q8IV63 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.81■□□□□ 0.28
VRK3Q8IV63 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.81■□□□□ 0.28
VRK3Q8IV63 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
VRK3Q8IV63 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
VRK3Q8IV63 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.81■□□□□ 0.28
VRK3Q8IV63 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VRK3Q8IV63 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.81■□□□□ 0.28
VRK3Q8IV63 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VRK3Q8IV63 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
VRK3Q8IV63 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
VRK3Q8IV63 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VRK3Q8IV63 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VRK3Q8IV63 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VRK3Q8IV63 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VRK3Q8IV63 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VRK3Q8IV63 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VRK3Q8IV63 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.8■□□□□ 0.28
VRK3Q8IV63 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VRK3Q8IV63 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VRK3Q8IV63 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VRK3Q8IV63 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VRK3Q8IV63 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.8■□□□□ 0.28
VRK3Q8IV63 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.8■□□□□ 0.28
VRK3Q8IV63 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.8■□□□□ 0.28
VRK3Q8IV63 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.8■□□□□ 0.28
VRK3Q8IV63 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VRK3Q8IV63 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VRK3Q8IV63 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.8■□□□□ 0.28
VRK3Q8IV63 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.8■□□□□ 0.28
VRK3Q8IV63 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.8■□□□□ 0.28
VRK3Q8IV63 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.8■□□□□ 0.28
VRK3Q8IV63 AC006557.2-201ENST00000592985 1240 ntBASIC16.8■□□□□ 0.28
VRK3Q8IV63 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.8■□□□□ 0.28
VRK3Q8IV63 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
VRK3Q8IV63 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.8■□□□□ 0.28
VRK3Q8IV63 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VRK3Q8IV63 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VRK3Q8IV63 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
VRK3Q8IV63 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.8■□□□□ 0.28
VRK3Q8IV63 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VRK3Q8IV63 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VRK3Q8IV63 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VRK3Q8IV63 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK3Q8IV63 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VRK3Q8IV63 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 HLA-A-201ENST00000376802 1334 ntBASIC16.79■□□□□ 0.28
VRK3Q8IV63 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK3Q8IV63 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK3Q8IV63 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK3Q8IV63 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK3Q8IV63 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK3Q8IV63 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK3Q8IV63 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK3Q8IV63 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK3Q8IV63 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK3Q8IV63 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK3Q8IV63 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK3Q8IV63 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
VRK3Q8IV63 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 AC243591.1-201ENST00000452967 1364 ntBASIC16.78■□□□□ 0.28
VRK3Q8IV63 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
VRK3Q8IV63 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms