Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE3Q6ZMZ3 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.27■□□□□ 0.83
SYNE3Q6ZMZ3 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.27■□□□□ 0.83
SYNE3Q6ZMZ3 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
SYNE3Q6ZMZ3 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 ACTG1P4-201ENST00000425123 1122 ntBASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 SART3-203ENST00000546611 1184 ntBASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 RN7SL510P-201ENST00000581311 263 ntBASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE3Q6ZMZ3 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 MTDHP4-201ENST00000600287 670 ntBASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms