Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 DUX4L17-201ENST00000557360 1267 ntBASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 AC004449.1-201ENST00000564240 433 ntBASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHROOM1Q2M3G4 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 MIR770-201ENST00000390219 98 ntBASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 AC002056.1-201ENST00000395613 760 ntBASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 AC079140.1-201ENST00000508039 487 ntBASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 MIR4515-201ENST00000584082 81 ntBASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 AC026120.1-201ENST00000611536 926 ntBASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 LINC00628-201ENST00000628516 1289 ntBASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.94■□□□□ 0.78
SHROOM1Q2M3G4 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 EGFEM1P-202ENST00000431685 1563 ntBASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 AC005498.2-205ENST00000593218 784 ntBASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 AL390955.2-201ENST00000603032 514 ntBASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 AL645728.2-201ENST00000641974 660 ntBASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHROOM1Q2M3G4 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHROOM1Q2M3G4 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
SHROOM1Q2M3G4 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.92■□□□□ 0.78
SHROOM1Q2M3G4 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.92■□□□□ 0.78
SHROOM1Q2M3G4 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.92■□□□□ 0.78
SHROOM1Q2M3G4 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHROOM1Q2M3G4 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHROOM1Q2M3G4 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.92■□□□□ 0.78
SHROOM1Q2M3G4 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHROOM1Q2M3G4 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHROOM1Q2M3G4 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms