Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 IER3-202ENST00000376377 1350 ntBASIC19.92■□□□□ 0.78
SF3A1Q15459 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SF3A1Q15459 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.92■□□□□ 0.78
SF3A1Q15459 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SF3A1Q15459 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SF3A1Q15459 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SF3A1Q15459 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SF3A1Q15459 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SF3A1Q15459 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SF3A1Q15459 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SF3A1Q15459 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SF3A1Q15459 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SF3A1Q15459 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SF3A1Q15459 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SF3A1Q15459 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SF3A1Q15459 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.91■□□□□ 0.78
SF3A1Q15459 AP002414.4-201ENST00000589764 1148 ntBASIC19.91■□□□□ 0.78
SF3A1Q15459 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
SF3A1Q15459 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SF3A1Q15459 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.91■□□□□ 0.78
SF3A1Q15459 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SF3A1Q15459 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SF3A1Q15459 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.91■□□□□ 0.78
SF3A1Q15459 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.91■□□□□ 0.78
SF3A1Q15459 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.91■□□□□ 0.78
SF3A1Q15459 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SF3A1Q15459 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.91■□□□□ 0.78
SF3A1Q15459 AL353593.2-201ENST00000602529 1483 ntBASIC19.91■□□□□ 0.78
SF3A1Q15459 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SF3A1Q15459 AC124067.4-201ENST00000519691 2379 ntBASIC19.91■□□□□ 0.78
SF3A1Q15459 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SF3A1Q15459 ACE-204ENST00000428043 5120 ntTSL 2 BASIC19.9■□□□□ 0.78
SF3A1Q15459 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SF3A1Q15459 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SF3A1Q15459 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
SF3A1Q15459 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.9■□□□□ 0.78
SF3A1Q15459 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SF3A1Q15459 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SF3A1Q15459 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SF3A1Q15459 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SF3A1Q15459 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.9■□□□□ 0.78
SF3A1Q15459 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SF3A1Q15459 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SF3A1Q15459 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SF3A1Q15459 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SF3A1Q15459 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SF3A1Q15459 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.9■□□□□ 0.78
SF3A1Q15459 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SF3A1Q15459 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SF3A1Q15459 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SF3A1Q15459 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.9■□□□□ 0.78
SF3A1Q15459 DRAXINP1-201ENST00000437611 948 ntBASIC19.9■□□□□ 0.78
SF3A1Q15459 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.9■□□□□ 0.78
SF3A1Q15459 STK25P1-201ENST00000585406 838 ntBASIC19.9■□□□□ 0.78
SF3A1Q15459 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
SF3A1Q15459 AC011467.2-201ENST00000598425 242 ntBASIC19.9■□□□□ 0.78
SF3A1Q15459 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.9■□□□□ 0.78
SF3A1Q15459 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.9■□□□□ 0.78
SF3A1Q15459 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SF3A1Q15459 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SF3A1Q15459 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SF3A1Q15459 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SF3A1Q15459 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
SF3A1Q15459 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
SF3A1Q15459 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SF3A1Q15459 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SF3A1Q15459 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SF3A1Q15459 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SF3A1Q15459 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SF3A1Q15459 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SF3A1Q15459 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SF3A1Q15459 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SF3A1Q15459 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SF3A1Q15459 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
SF3A1Q15459 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SF3A1Q15459 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SF3A1Q15459 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SF3A1Q15459 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
SF3A1Q15459 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.89■□□□□ 0.77
SF3A1Q15459 TOB2P1-201ENST00000469761 992 ntBASIC19.89■□□□□ 0.77
SF3A1Q15459 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SF3A1Q15459 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC19.89■□□□□ 0.77
SF3A1Q15459 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.89■□□□□ 0.77
SF3A1Q15459 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SF3A1Q15459 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SF3A1Q15459 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.89■□□□□ 0.77
SF3A1Q15459 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SF3A1Q15459 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.89■□□□□ 0.77
SF3A1Q15459 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SF3A1Q15459 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SF3A1Q15459 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC19.88■□□□□ 0.77
SF3A1Q15459 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SF3A1Q15459 AC092053.1-201ENST00000605787 1936 ntBASIC19.88■□□□□ 0.77
SF3A1Q15459 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SF3A1Q15459 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SF3A1Q15459 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SF3A1Q15459 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SF3A1Q15459 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SF3A1Q15459 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SF3A1Q15459 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms