Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BRCA1P38398 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.62■□□□□ 0.89
BRCA1P38398 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRCA1P38398 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BRCA1P38398 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC20.62■□□□□ 0.89
BRCA1P38398 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC20.62■□□□□ 0.89
BRCA1P38398 AC007389.4-201ENST00000454674 793 ntBASIC20.62■□□□□ 0.89
BRCA1P38398 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BRCA1P38398 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC20.62■□□□□ 0.89
BRCA1P38398 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BRCA1P38398 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC20.62■□□□□ 0.89
BRCA1P38398 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
BRCA1P38398 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC20.62■□□□□ 0.89
BRCA1P38398 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRCA1P38398 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
BRCA1P38398 AL133338.1-201ENST00000565695 1517 ntBASIC20.61■□□□□ 0.89
BRCA1P38398 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BRCA1P38398 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
BRCA1P38398 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BRCA1P38398 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BRCA1P38398 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BRCA1P38398 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BRCA1P38398 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.61■□□□□ 0.89
BRCA1P38398 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.61■□□□□ 0.89
BRCA1P38398 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BRCA1P38398 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BRCA1P38398 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC20.61■□□□□ 0.89
BRCA1P38398 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC20.61■□□□□ 0.89
BRCA1P38398 AL109936.8-201ENST00000641772 604 ntBASIC20.61■□□□□ 0.89
BRCA1P38398 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BRCA1P38398 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.61■□□□□ 0.89
BRCA1P38398 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC20.61■□□□□ 0.89
BRCA1P38398 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BRCA1P38398 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BRCA1P38398 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC20.6■□□□□ 0.89
BRCA1P38398 CDK2AP2P3-201ENST00000422476 372 ntBASIC20.6■□□□□ 0.89
BRCA1P38398 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRCA1P38398 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC20.6■□□□□ 0.89
BRCA1P38398 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BRCA1P38398 LINC01451-201ENST00000623792 534 ntBASIC20.6■□□□□ 0.89
BRCA1P38398 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRCA1P38398 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.6■□□□□ 0.89
BRCA1P38398 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
BRCA1P38398 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC20.6■□□□□ 0.89
BRCA1P38398 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRCA1P38398 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BRCA1P38398 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRCA1P38398 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRCA1P38398 LINC00896-202ENST00000609602 2128 ntBASIC20.6■□□□□ 0.89
BRCA1P38398 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BRCA1P38398 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
BRCA1P38398 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRCA1P38398 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BRCA1P38398 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRCA1P38398 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRCA1P38398 STARD13-205ENST00000439831 945 ntTSL 2 BASIC20.6■□□□□ 0.89
BRCA1P38398 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC20.6■□□□□ 0.89
BRCA1P38398 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BRCA1P38398 AL512343.1-201ENST00000605837 169 ntBASIC20.6■□□□□ 0.89
BRCA1P38398 AC099568.2-201ENST00000609194 695 ntBASIC20.6■□□□□ 0.89
BRCA1P38398 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BRCA1P38398 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.6■□□□□ 0.89
BRCA1P38398 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
BRCA1P38398 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
BRCA1P38398 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BRCA1P38398 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
BRCA1P38398 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
BRCA1P38398 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.59■□□□□ 0.89
BRCA1P38398 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC20.59■□□□□ 0.89
BRCA1P38398 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
BRCA1P38398 AC098850.1-201ENST00000419919 790 ntBASIC20.59■□□□□ 0.89
BRCA1P38398 RN7SL752P-201ENST00000463779 287 ntBASIC20.59■□□□□ 0.89
BRCA1P38398 FAM8A2P-201ENST00000528813 1142 ntBASIC20.59■□□□□ 0.89
BRCA1P38398 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC20.59■□□□□ 0.89
BRCA1P38398 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC20.59■□□□□ 0.89
BRCA1P38398 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC20.59■□□□□ 0.89
BRCA1P38398 AL589739.1-201ENST00000607720 493 ntBASIC20.59■□□□□ 0.89
BRCA1P38398 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
BRCA1P38398 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BRCA1P38398 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC20.59■□□□□ 0.89
BRCA1P38398 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BRCA1P38398 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BRCA1P38398 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRCA1P38398 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRCA1P38398 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRCA1P38398 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
BRCA1P38398 BNIP3P42-201ENST00000454982 569 ntBASIC20.58■□□□□ 0.89
BRCA1P38398 BNIP3P29-201ENST00000598302 571 ntBASIC20.58■□□□□ 0.89
BRCA1P38398 AC011447.5-201ENST00000616168 564 ntBASIC20.58■□□□□ 0.89
BRCA1P38398 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.58■□□□□ 0.89
BRCA1P38398 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRCA1P38398 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.58■□□□□ 0.89
BRCA1P38398 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.58■□□□□ 0.89
BRCA1P38398 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRCA1P38398 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
BRCA1P38398 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
BRCA1P38398 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
BRCA1P38398 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC20.58■□□□□ 0.88
BRCA1P38398 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.88
BRCA1P38398 MIR4538-201ENST00000581377 78 ntBASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms