Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL513477.1-201ENST00000602865 2407 ntBASIC16.47■□□□□ 0.23
MSX2P35548 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSX2P35548 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSX2P35548 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.47■□□□□ 0.23
MSX2P35548 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.47■□□□□ 0.23
MSX2P35548 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
MSX2P35548 ALOX12P2-203ENST00000570921 1945 ntBASIC16.47■□□□□ 0.23
MSX2P35548 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.47■□□□□ 0.23
MSX2P35548 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.47■□□□□ 0.23
MSX2P35548 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSX2P35548 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
MSX2P35548 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.47■□□□□ 0.23
MSX2P35548 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC16.47■□□□□ 0.23
MSX2P35548 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.47■□□□□ 0.23
MSX2P35548 AC024563.2-201ENST00000603282 481 ntBASIC16.47■□□□□ 0.23
MSX2P35548 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.47■□□□□ 0.23
MSX2P35548 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
MSX2P35548 AC010653.2-201ENST00000623505 997 ntBASIC16.47■□□□□ 0.23
MSX2P35548 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
MSX2P35548 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.47■□□□□ 0.23
MSX2P35548 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.47■□□□□ 0.23
MSX2P35548 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
MSX2P35548 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSX2P35548 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSX2P35548 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
MSX2P35548 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
MSX2P35548 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.47■□□□□ 0.23
MSX2P35548 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.47■□□□□ 0.23
MSX2P35548 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
MSX2P35548 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSX2P35548 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX2P35548 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSX2P35548 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSX2P35548 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSX2P35548 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSX2P35548 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX2P35548 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX2P35548 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX2P35548 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.46■□□□□ 0.23
MSX2P35548 AC023824.1-201ENST00000562945 2975 ntBASIC16.46■□□□□ 0.23
MSX2P35548 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.46■□□□□ 0.23
MSX2P35548 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.46■□□□□ 0.23
MSX2P35548 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
MSX2P35548 MIR1238-201ENST00000408483 83 ntBASIC16.46■□□□□ 0.23
MSX2P35548 AC012618.2-201ENST00000428058 849 ntBASIC16.46■□□□□ 0.23
MSX2P35548 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.46■□□□□ 0.23
MSX2P35548 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX2P35548 FITM1-202ENST00000559294 800 ntBASIC16.46■□□□□ 0.23
MSX2P35548 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSX2P35548 AP001412.1-201ENST00000608405 714 ntBASIC16.46■□□□□ 0.23
MSX2P35548 AC004263.2-201ENST00000617183 678 ntBASIC16.46■□□□□ 0.23
MSX2P35548 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.46■□□□□ 0.23
MSX2P35548 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
MSX2P35548 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX2P35548 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX2P35548 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX2P35548 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSX2P35548 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.46■□□□□ 0.23
MSX2P35548 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
MSX2P35548 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX2P35548 AC022188.1-201ENST00000620960 1664 ntBASIC16.46■□□□□ 0.23
MSX2P35548 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
MSX2P35548 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
MSX2P35548 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
MSX2P35548 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
MSX2P35548 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.45■□□□□ 0.22
MSX2P35548 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.45■□□□□ 0.22
MSX2P35548 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.45■□□□□ 0.22
MSX2P35548 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
MSX2P35548 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.45■□□□□ 0.22
MSX2P35548 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.45■□□□□ 0.22
MSX2P35548 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 AC142381.4-202ENST00000563973 229 ntBASIC16.45■□□□□ 0.22
MSX2P35548 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC16.45■□□□□ 0.22
MSX2P35548 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
MSX2P35548 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.45■□□□□ 0.22
MSX2P35548 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
MSX2P35548 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms