Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 PARP8-218ENST00000513738 596 ntTSL 4 BASIC20.05■□□□□ 0.8
SCN4AP35499 AL512361.1-201ENST00000554200 418 ntBASIC20.05■□□□□ 0.8
SCN4AP35499 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SCN4AP35499 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SCN4AP35499 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SCN4AP35499 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SCN4AP35499 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SCN4AP35499 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SCN4AP35499 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SCN4AP35499 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SCN4AP35499 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SCN4AP35499 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SCN4AP35499 OSM-203ENST00000403463 464 ntTSL 3 BASIC20.04■□□□□ 0.8
SCN4AP35499 AL079307.3-201ENST00000556114 283 ntBASIC20.04■□□□□ 0.8
SCN4AP35499 ORC6-206ENST00000568364 888 ntTSL 5 BASIC20.04■□□□□ 0.8
SCN4AP35499 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SCN4AP35499 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SCN4AP35499 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SCN4AP35499 LINC00895-201ENST00000629028 1637 ntBASIC20.04■□□□□ 0.8
SCN4AP35499 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SCN4AP35499 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.04■□□□□ 0.8
SCN4AP35499 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SCN4AP35499 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
SCN4AP35499 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SCN4AP35499 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC20.04■□□□□ 0.8
SCN4AP35499 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC20.04■□□□□ 0.8
SCN4AP35499 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC20.04■□□□□ 0.8
SCN4AP35499 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC20.04■□□□□ 0.8
SCN4AP35499 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SCN4AP35499 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SCN4AP35499 AC099568.2-201ENST00000609194 695 ntBASIC20.04■□□□□ 0.8
SCN4AP35499 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC20.04■□□□□ 0.8
SCN4AP35499 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.04■□□□□ 0.8
SCN4AP35499 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SCN4AP35499 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SCN4AP35499 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SCN4AP35499 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SCN4AP35499 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC20.03■□□□□ 0.8
SCN4AP35499 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCN4AP35499 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCN4AP35499 AC116562.4-201ENST00000641316 2276 ntBASIC20.03■□□□□ 0.8
SCN4AP35499 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SCN4AP35499 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC20.03■□□□□ 0.8
SCN4AP35499 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SCN4AP35499 KRT18P34-201ENST00000488218 1270 ntBASIC20.03■□□□□ 0.8
SCN4AP35499 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC20.03■□□□□ 0.8
SCN4AP35499 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.03■□□□□ 0.8
SCN4AP35499 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC20.03■□□□□ 0.8
SCN4AP35499 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
SCN4AP35499 AC135776.1-201ENST00000319817 2481 ntBASIC20.02■□□□□ 0.8
SCN4AP35499 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SCN4AP35499 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.02■□□□□ 0.8
SCN4AP35499 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCN4AP35499 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC20.02■□□□□ 0.8
SCN4AP35499 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC20.02■□□□□ 0.8
SCN4AP35499 MIR4492-201ENST00000581627 80 ntBASIC20.02■□□□□ 0.8
SCN4AP35499 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC20.02■□□□□ 0.8
SCN4AP35499 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC20.02■□□□□ 0.8
SCN4AP35499 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SCN4AP35499 AC068587.10-201ENST00000641210 219 ntBASIC20.02■□□□□ 0.8
SCN4AP35499 CROCCP3-202ENST00000420820 1947 ntBASIC20.02■□□□□ 0.8
SCN4AP35499 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCN4AP35499 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SCN4AP35499 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.02■□□□□ 0.8
SCN4AP35499 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SCN4AP35499 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
SCN4AP35499 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SCN4AP35499 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.02■□□□□ 0.8
SCN4AP35499 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SCN4AP35499 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCN4AP35499 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SCN4AP35499 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC20.02■□□□□ 0.79
SCN4AP35499 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC20.02■□□□□ 0.79
SCN4AP35499 CDK2AP2P3-201ENST00000422476 372 ntBASIC20.02■□□□□ 0.79
SCN4AP35499 LINC01451-201ENST00000623792 534 ntBASIC20.02■□□□□ 0.79
SCN4AP35499 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SCN4AP35499 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCN4AP35499 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCN4AP35499 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCN4AP35499 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SCN4AP35499 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.01■□□□□ 0.79
SCN4AP35499 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCN4AP35499 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCN4AP35499 ANKRD19P-201ENST00000338192 862 ntBASIC20.01■□□□□ 0.79
SCN4AP35499 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SCN4AP35499 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SCN4AP35499 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCN4AP35499 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCN4AP35499 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC20.01■□□□□ 0.79
SCN4AP35499 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCN4AP35499 MIR4538-201ENST00000581377 78 ntBASIC20.01■□□□□ 0.79
SCN4AP35499 AC133552.6-201ENST00000613406 534 ntBASIC20.01■□□□□ 0.79
SCN4AP35499 MIR6775-201ENST00000617557 69 ntBASIC20.01■□□□□ 0.79
SCN4AP35499 AL109936.8-201ENST00000641772 604 ntBASIC20.01■□□□□ 0.79
SCN4AP35499 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.01■□□□□ 0.79
SCN4AP35499 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCN4AP35499 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCN4AP35499 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.01■□□□□ 0.79
SCN4AP35499 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC20.01■□□□□ 0.79
SCN4AP35499 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms