Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.67■□□□□ 0.26
CLDN9O95484 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN9O95484 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN9O95484 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
CLDN9O95484 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN9O95484 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.67■□□□□ 0.26
CLDN9O95484 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN9O95484 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN9O95484 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN9O95484 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN9O95484 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
CLDN9O95484 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN9O95484 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN9O95484 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.67■□□□□ 0.26
CLDN9O95484 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.67■□□□□ 0.26
CLDN9O95484 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN9O95484 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CLDN9O95484 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN9O95484 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN9O95484 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN9O95484 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.67■□□□□ 0.26
CLDN9O95484 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.67■□□□□ 0.26
CLDN9O95484 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.67■□□□□ 0.26
CLDN9O95484 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CLDN9O95484 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN9O95484 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CLDN9O95484 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLDN9O95484 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CLDN9O95484 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 SPDYE21P-201ENST00000413323 827 ntBASIC16.66■□□□□ 0.26
CLDN9O95484 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.66■□□□□ 0.26
CLDN9O95484 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 ABCD1P5-201ENST00000445663 754 ntBASIC16.66■□□□□ 0.26
CLDN9O95484 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.66■□□□□ 0.26
CLDN9O95484 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.66■□□□□ 0.26
CLDN9O95484 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.66■□□□□ 0.26
CLDN9O95484 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.66■□□□□ 0.26
CLDN9O95484 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 AC148477.5-201ENST00000625164 1645 ntBASIC16.66■□□□□ 0.26
CLDN9O95484 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CLDN9O95484 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.66■□□□□ 0.26
CLDN9O95484 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 AGGF1P2-201ENST00000426656 2106 ntBASIC16.66■□□□□ 0.26
CLDN9O95484 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLDN9O95484 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.65■□□□□ 0.26
CLDN9O95484 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CLDN9O95484 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.65■□□□□ 0.26
CLDN9O95484 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CLDN9O95484 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
CLDN9O95484 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CLDN9O95484 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.65■□□□□ 0.26
CLDN9O95484 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CLDN9O95484 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.65■□□□□ 0.26
CLDN9O95484 NUS1P2-201ENST00000417358 873 ntBASIC16.65■□□□□ 0.26
CLDN9O95484 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.65■□□□□ 0.26
CLDN9O95484 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.65■□□□□ 0.26
CLDN9O95484 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.65■□□□□ 0.26
CLDN9O95484 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.65■□□□□ 0.26
CLDN9O95484 AC010331.1-201ENST00000611423 582 ntBASIC16.65■□□□□ 0.26
CLDN9O95484 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 AC093458.2-201ENST00000623150 629 ntBASIC16.65■□□□□ 0.26
CLDN9O95484 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.65■□□□□ 0.26
CLDN9O95484 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CLDN9O95484 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.65■□□□□ 0.26
CLDN9O95484 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.65■□□□□ 0.26
CLDN9O95484 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.65■□□□□ 0.26
CLDN9O95484 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLDN9O95484 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CLDN9O95484 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms