Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
SIX3O95343 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.85■□□□□ 0.29
SIX3O95343 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.85■□□□□ 0.29
SIX3O95343 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
SIX3O95343 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.85■□□□□ 0.29
SIX3O95343 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.85■□□□□ 0.29
SIX3O95343 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.85■□□□□ 0.29
SIX3O95343 RCN1P2-201ENST00000398357 915 ntBASIC16.85■□□□□ 0.29
SIX3O95343 LINC00265-3P-201ENST00000447588 903 ntBASIC16.85■□□□□ 0.29
SIX3O95343 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.85■□□□□ 0.29
SIX3O95343 AC124947.2-201ENST00000547118 1133 ntBASIC16.85■□□□□ 0.29
SIX3O95343 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.85■□□□□ 0.29
SIX3O95343 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.85■□□□□ 0.29
SIX3O95343 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SIX3O95343 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
SIX3O95343 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.85■□□□□ 0.29
SIX3O95343 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.85■□□□□ 0.29
SIX3O95343 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.85■□□□□ 0.29
SIX3O95343 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.85■□□□□ 0.29
SIX3O95343 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.85■□□□□ 0.29
SIX3O95343 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SIX3O95343 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SIX3O95343 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.84■□□□□ 0.29
SIX3O95343 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.84■□□□□ 0.29
SIX3O95343 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SIX3O95343 IGHV3-47-201ENST00000425060 335 ntBASIC16.84■□□□□ 0.29
SIX3O95343 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.84■□□□□ 0.29
SIX3O95343 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.84■□□□□ 0.29
SIX3O95343 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.84■□□□□ 0.29
SIX3O95343 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.84■□□□□ 0.29
SIX3O95343 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.84■□□□□ 0.29
SIX3O95343 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.84■□□□□ 0.29
SIX3O95343 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.84■□□□□ 0.29
SIX3O95343 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.84■□□□□ 0.29
SIX3O95343 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.84■□□□□ 0.29
SIX3O95343 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
SIX3O95343 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SIX3O95343 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SIX3O95343 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.84■□□□□ 0.29
SIX3O95343 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.84■□□□□ 0.29
SIX3O95343 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SIX3O95343 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SIX3O95343 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
SIX3O95343 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
SIX3O95343 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.83■□□□□ 0.29
SIX3O95343 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SIX3O95343 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SIX3O95343 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SIX3O95343 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SIX3O95343 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SIX3O95343 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SIX3O95343 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SIX3O95343 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.83■□□□□ 0.28
SIX3O95343 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.83■□□□□ 0.28
SIX3O95343 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
SIX3O95343 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
SIX3O95343 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SIX3O95343 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.83■□□□□ 0.28
SIX3O95343 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
SIX3O95343 AL590326.2-201ENST00000625139 305 ntBASIC16.83■□□□□ 0.28
SIX3O95343 AC148477.5-201ENST00000625164 1645 ntBASIC16.83■□□□□ 0.28
SIX3O95343 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SIX3O95343 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SIX3O95343 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
SIX3O95343 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SIX3O95343 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms