Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
RNF40O75150 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.64■□□□□ 0.58
RNF40O75150 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.64■□□□□ 0.58
RNF40O75150 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.64■□□□□ 0.58
RNF40O75150 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RNF40O75150 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
RNF40O75150 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNF40O75150 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNF40O75150 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNF40O75150 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNF40O75150 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RNF40O75150 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNF40O75150 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNF40O75150 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
RNF40O75150 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RNF40O75150 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.64■□□□□ 0.57
RNF40O75150 AL590627.1-203ENST00000421194 1026 ntBASIC18.64■□□□□ 0.57
RNF40O75150 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.64■□□□□ 0.57
RNF40O75150 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.64■□□□□ 0.57
RNF40O75150 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.64■□□□□ 0.57
RNF40O75150 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RNF40O75150 BX640515.1-201ENST00000617215 977 ntBASIC18.64■□□□□ 0.57
RNF40O75150 TP73-AS1-207ENST00000624167 988 ntBASIC18.64■□□□□ 0.57
RNF40O75150 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNF40O75150 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.64■□□□□ 0.57
RNF40O75150 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNF40O75150 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNF40O75150 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNF40O75150 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.64■□□□□ 0.57
RNF40O75150 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RNF40O75150 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNF40O75150 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNF40O75150 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RNF40O75150 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RNF40O75150 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.64■□□□□ 0.57
RNF40O75150 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
RNF40O75150 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
RNF40O75150 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF40O75150 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RNF40O75150 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.63■□□□□ 0.57
RNF40O75150 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF40O75150 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF40O75150 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF40O75150 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF40O75150 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.63■□□□□ 0.57
RNF40O75150 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF40O75150 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.63■□□□□ 0.57
RNF40O75150 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.63■□□□□ 0.57
RNF40O75150 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.63■□□□□ 0.57
RNF40O75150 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
RNF40O75150 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
RNF40O75150 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
RNF40O75150 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.63■□□□□ 0.57
RNF40O75150 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF40O75150 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF40O75150 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF40O75150 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RNF40O75150 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RNF40O75150 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RNF40O75150 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF40O75150 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF40O75150 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF40O75150 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF40O75150 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF40O75150 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC18.62■□□□□ 0.57
RNF40O75150 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF40O75150 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF40O75150 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF40O75150 FUK-207ENST00000571514 3054 ntTSL 2 BASIC18.62■□□□□ 0.57
RNF40O75150 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.62■□□□□ 0.57
RNF40O75150 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF40O75150 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF40O75150 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF40O75150 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.62■□□□□ 0.57
RNF40O75150 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.62■□□□□ 0.57
RNF40O75150 AC064862.7-201ENST00000604520 867 ntBASIC18.62■□□□□ 0.57
RNF40O75150 AC244517.3-201ENST00000616254 1235 ntBASIC18.62■□□□□ 0.57
RNF40O75150 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.62■□□□□ 0.57
RNF40O75150 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.62■□□□□ 0.57
RNF40O75150 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
RNF40O75150 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF40O75150 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.62■□□□□ 0.57
RNF40O75150 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF40O75150 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
RNF40O75150 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
RNF40O75150 AL513477.1-201ENST00000602865 2407 ntBASIC18.62■□□□□ 0.57
RNF40O75150 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC18.62■□□□□ 0.57
RNF40O75150 AGK-211ENST00000629555 2765 ntTSL 5 BASIC18.62■□□□□ 0.57
RNF40O75150 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF40O75150 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF40O75150 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
RNF40O75150 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF40O75150 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF40O75150 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF40O75150 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF40O75150 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF40O75150 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF40O75150 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.61■□□□□ 0.57
RNF40O75150 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.61■□□□□ 0.57
RNF40O75150 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms