Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.8■□□□□ 0.28
SDC3O75056 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SDC3O75056 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.8■□□□□ 0.28
SDC3O75056 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.8■□□□□ 0.28
SDC3O75056 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.8■□□□□ 0.28
SDC3O75056 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.8■□□□□ 0.28
SDC3O75056 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.8■□□□□ 0.28
SDC3O75056 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.8■□□□□ 0.28
SDC3O75056 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SDC3O75056 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.8■□□□□ 0.28
SDC3O75056 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.8■□□□□ 0.28
SDC3O75056 AC105339.1-204ENST00000636249 355 ntBASIC16.8■□□□□ 0.28
SDC3O75056 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.8■□□□□ 0.28
SDC3O75056 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SDC3O75056 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SDC3O75056 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
SDC3O75056 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.8■□□□□ 0.28
SDC3O75056 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
SDC3O75056 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC3O75056 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.8■□□□□ 0.28
SDC3O75056 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.8■□□□□ 0.28
SDC3O75056 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SDC3O75056 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SDC3O75056 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SDC3O75056 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDC3O75056 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDC3O75056 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDC3O75056 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.79■□□□□ 0.28
SDC3O75056 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDC3O75056 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDC3O75056 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDC3O75056 AC012317.2-201ENST00000623305 2251 ntBASIC16.79■□□□□ 0.28
SDC3O75056 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SDC3O75056 ABALON-201ENST00000629058 1903 ntBASIC16.79■□□□□ 0.28
SDC3O75056 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDC3O75056 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
SDC3O75056 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.79■□□□□ 0.28
SDC3O75056 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SDC3O75056 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SDC3O75056 PAWRP1-201ENST00000451083 565 ntBASIC16.79■□□□□ 0.28
SDC3O75056 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SDC3O75056 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.79■□□□□ 0.28
SDC3O75056 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.79■□□□□ 0.28
SDC3O75056 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.79■□□□□ 0.28
SDC3O75056 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.79■□□□□ 0.28
SDC3O75056 REXO1L3P-201ENST00000622202 1288 ntBASIC16.79■□□□□ 0.28
SDC3O75056 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.79■□□□□ 0.28
SDC3O75056 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SDC3O75056 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDC3O75056 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
SDC3O75056 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.79■□□□□ 0.28
SDC3O75056 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SDC3O75056 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.79■□□□□ 0.28
SDC3O75056 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.79■□□□□ 0.28
SDC3O75056 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDC3O75056 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
SDC3O75056 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDC3O75056 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDC3O75056 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDC3O75056 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SDC3O75056 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDC3O75056 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SDC3O75056 MIR770-201ENST00000390219 98 ntBASIC16.78■□□□□ 0.28
SDC3O75056 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.78■□□□□ 0.28
SDC3O75056 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SDC3O75056 TIMM8BP1-201ENST00000452384 211 ntBASIC16.78■□□□□ 0.28
SDC3O75056 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.78■□□□□ 0.28
SDC3O75056 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.78■□□□□ 0.28
SDC3O75056 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.78■□□□□ 0.28
SDC3O75056 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.78■□□□□ 0.28
SDC3O75056 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.78■□□□□ 0.28
SDC3O75056 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.78■□□□□ 0.28
SDC3O75056 AC022145.2-201ENST00000598203 171 ntBASIC16.78■□□□□ 0.28
SDC3O75056 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SDC3O75056 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.78■□□□□ 0.28
SDC3O75056 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDC3O75056 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
SDC3O75056 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDC3O75056 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SDC3O75056 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDC3O75056 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDC3O75056 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.78■□□□□ 0.28
SDC3O75056 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms