Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LSM4Q9Y4Z0 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LSM4Q9Y4Z0 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM4Q9Y4Z0 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM4Q9Y4Z0 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LSM4Q9Y4Z0 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
LSM4Q9Y4Z0 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
LSM4Q9Y4Z0 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
LSM4Q9Y4Z0 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC19.27■□□□□ 0.67
LSM4Q9Y4Z0 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.26■□□□□ 0.67
LSM4Q9Y4Z0 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LSM4Q9Y4Z0 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LSM4Q9Y4Z0 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
LSM4Q9Y4Z0 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC19.26■□□□□ 0.67
LSM4Q9Y4Z0 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LSM4Q9Y4Z0 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM4Q9Y4Z0 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
LSM4Q9Y4Z0 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.25■□□□□ 0.67
LSM4Q9Y4Z0 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM4Q9Y4Z0 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM4Q9Y4Z0 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM4Q9Y4Z0 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LSM4Q9Y4Z0 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
LSM4Q9Y4Z0 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.24■□□□□ 0.67
LSM4Q9Y4Z0 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
LSM4Q9Y4Z0 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM4Q9Y4Z0 AC142381.3-201ENST00000568208 1670 ntBASIC19.24■□□□□ 0.67
LSM4Q9Y4Z0 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC19.23■□□□□ 0.67
LSM4Q9Y4Z0 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM4Q9Y4Z0 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM4Q9Y4Z0 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM4Q9Y4Z0 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.23■□□□□ 0.67
LSM4Q9Y4Z0 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LSM4Q9Y4Z0 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LSM4Q9Y4Z0 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
LSM4Q9Y4Z0 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM4Q9Y4Z0 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM4Q9Y4Z0 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM4Q9Y4Z0 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM4Q9Y4Z0 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM4Q9Y4Z0 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LSM4Q9Y4Z0 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LSM4Q9Y4Z0 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM4Q9Y4Z0 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LSM4Q9Y4Z0 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
LSM4Q9Y4Z0 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LSM4Q9Y4Z0 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC19.21■□□□□ 0.67
LSM4Q9Y4Z0 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
LSM4Q9Y4Z0 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC19.21■□□□□ 0.67
LSM4Q9Y4Z0 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM4Q9Y4Z0 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM4Q9Y4Z0 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM4Q9Y4Z0 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC19.2■□□□□ 0.66
LSM4Q9Y4Z0 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LSM4Q9Y4Z0 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LSM4Q9Y4Z0 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM4Q9Y4Z0 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM4Q9Y4Z0 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LSM4Q9Y4Z0 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC19.19■□□□□ 0.66
LSM4Q9Y4Z0 AC022413.1-201ENST00000624602 984 ntBASIC19.19■□□□□ 0.66
LSM4Q9Y4Z0 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.18■□□□□ 0.66
LSM4Q9Y4Z0 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM4Q9Y4Z0 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM4Q9Y4Z0 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.18■□□□□ 0.66
LSM4Q9Y4Z0 AC008813.1-201ENST00000536597 885 ntBASIC19.18■□□□□ 0.66
LSM4Q9Y4Z0 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
LSM4Q9Y4Z0 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LSM4Q9Y4Z0 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM4Q9Y4Z0 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM4Q9Y4Z0 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
LSM4Q9Y4Z0 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LSM4Q9Y4Z0 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
LSM4Q9Y4Z0 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM4Q9Y4Z0 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
LSM4Q9Y4Z0 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LSM4Q9Y4Z0 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LSM4Q9Y4Z0 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LSM4Q9Y4Z0 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LSM4Q9Y4Z0 HES4-202ENST00000428771 1040 ntTSL 2 BASIC19.16■□□□□ 0.66
LSM4Q9Y4Z0 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM4Q9Y4Z0 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LSM4Q9Y4Z0 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM4Q9Y4Z0 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM4Q9Y4Z0 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.16■□□□□ 0.66
LSM4Q9Y4Z0 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LSM4Q9Y4Z0 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LSM4Q9Y4Z0 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
LSM4Q9Y4Z0 AC022211.4-201ENST00000625094 2161 ntBASIC19.15■□□□□ 0.66
LSM4Q9Y4Z0 RPS2-210ENST00000530225 765 ntTSL 2 BASIC19.14■□□□□ 0.65
LSM4Q9Y4Z0 NTF6A-201ENST00000591175 560 ntBASIC19.14■□□□□ 0.65
LSM4Q9Y4Z0 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.14■□□□□ 0.65
LSM4Q9Y4Z0 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LSM4Q9Y4Z0 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC19.14■□□□□ 0.65
LSM4Q9Y4Z0 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LSM4Q9Y4Z0 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LSM4Q9Y4Z0 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC19.13■□□□□ 0.65
LSM4Q9Y4Z0 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.13■□□□□ 0.65
LSM4Q9Y4Z0 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC19.13■□□□□ 0.65
LSM4Q9Y4Z0 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.13■□□□□ 0.65
LSM4Q9Y4Z0 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 229.5 ms