Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
BRF2Q9HAW0 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
BRF2Q9HAW0 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC23.18■■□□□ 1.3
BRF2Q9HAW0 MOB2-207ENST00000614710 705 ntTSL 5 BASIC23.18■■□□□ 1.3
BRF2Q9HAW0 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
BRF2Q9HAW0 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC23.18■■□□□ 1.3
BRF2Q9HAW0 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
BRF2Q9HAW0 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.17■■□□□ 1.3
BRF2Q9HAW0 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
BRF2Q9HAW0 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
BRF2Q9HAW0 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
BRF2Q9HAW0 AC092296.2-201ENST00000589470 999 ntBASIC23.17■■□□□ 1.3
BRF2Q9HAW0 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
BRF2Q9HAW0 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
BRF2Q9HAW0 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC23.17■■□□□ 1.3
BRF2Q9HAW0 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.17■■□□□ 1.3
BRF2Q9HAW0 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
BRF2Q9HAW0 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
BRF2Q9HAW0 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.16■■□□□ 1.3
BRF2Q9HAW0 AC096887.2-201ENST00000623443 1957 ntBASIC23.16■■□□□ 1.3
BRF2Q9HAW0 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
BRF2Q9HAW0 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
BRF2Q9HAW0 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
BRF2Q9HAW0 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
BRF2Q9HAW0 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
BRF2Q9HAW0 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.15■■□□□ 1.3
BRF2Q9HAW0 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.15■■□□□ 1.3
BRF2Q9HAW0 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.3
BRF2Q9HAW0 MIR3960-201ENST00000583311 91 ntBASIC23.14■■□□□ 1.29
BRF2Q9HAW0 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
BRF2Q9HAW0 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
BRF2Q9HAW0 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
BRF2Q9HAW0 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.13■■□□□ 1.29
BRF2Q9HAW0 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
BRF2Q9HAW0 MIR4449-201ENST00000578365 66 ntBASIC23.13■■□□□ 1.29
BRF2Q9HAW0 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
BRF2Q9HAW0 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
BRF2Q9HAW0 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.13■■□□□ 1.29
BRF2Q9HAW0 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC23.12■■□□□ 1.29
BRF2Q9HAW0 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
BRF2Q9HAW0 SMPD5-203ENST00000639008 1464 ntBASIC23.12■■□□□ 1.29
BRF2Q9HAW0 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.12■■□□□ 1.29
BRF2Q9HAW0 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
BRF2Q9HAW0 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.12■■□□□ 1.29
BRF2Q9HAW0 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
BRF2Q9HAW0 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
BRF2Q9HAW0 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
BRF2Q9HAW0 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.11■■□□□ 1.29
BRF2Q9HAW0 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
BRF2Q9HAW0 ECEL1P2-201ENST00000461596 1295 ntBASIC23.11■■□□□ 1.29
BRF2Q9HAW0 AC022413.1-201ENST00000624602 984 ntBASIC23.11■■□□□ 1.29
BRF2Q9HAW0 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
BRF2Q9HAW0 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.1■■□□□ 1.29
BRF2Q9HAW0 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
BRF2Q9HAW0 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
BRF2Q9HAW0 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
BRF2Q9HAW0 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.1■■□□□ 1.29
BRF2Q9HAW0 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
BRF2Q9HAW0 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
BRF2Q9HAW0 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
BRF2Q9HAW0 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
BRF2Q9HAW0 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.09■■□□□ 1.29
BRF2Q9HAW0 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
BRF2Q9HAW0 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
BRF2Q9HAW0 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
BRF2Q9HAW0 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.08■■□□□ 1.29
BRF2Q9HAW0 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.28
BRF2Q9HAW0 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
BRF2Q9HAW0 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
BRF2Q9HAW0 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
BRF2Q9HAW0 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
BRF2Q9HAW0 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
BRF2Q9HAW0 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
BRF2Q9HAW0 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
BRF2Q9HAW0 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.07■■□□□ 1.28
BRF2Q9HAW0 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.06■■□□□ 1.28
BRF2Q9HAW0 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
BRF2Q9HAW0 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
BRF2Q9HAW0 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
BRF2Q9HAW0 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.06■■□□□ 1.28
BRF2Q9HAW0 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.06■■□□□ 1.28
BRF2Q9HAW0 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.06■■□□□ 1.28
BRF2Q9HAW0 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
BRF2Q9HAW0 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.05■■□□□ 1.28
BRF2Q9HAW0 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
BRF2Q9HAW0 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
BRF2Q9HAW0 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
BRF2Q9HAW0 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.05■■□□□ 1.28
BRF2Q9HAW0 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
BRF2Q9HAW0 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.05■■□□□ 1.28
BRF2Q9HAW0 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.03■■□□□ 1.28
BRF2Q9HAW0 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
BRF2Q9HAW0 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
BRF2Q9HAW0 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.03■■□□□ 1.28
BRF2Q9HAW0 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
BRF2Q9HAW0 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
BRF2Q9HAW0 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
BRF2Q9HAW0 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.02■■□□□ 1.28
BRF2Q9HAW0 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
BRF2Q9HAW0 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms