Protein–RNA interactions for Protein: Q96NZ1

FOXN4, Forkhead box protein N4, humanhuman

Predictions only

Length 517 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN4Q96NZ1 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
FOXN4Q96NZ1 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
FOXN4Q96NZ1 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
FOXN4Q96NZ1 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
FOXN4Q96NZ1 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
FOXN4Q96NZ1 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
FOXN4Q96NZ1 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
FOXN4Q96NZ1 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
FOXN4Q96NZ1 GPX1-201ENST00000419349 1106 ntBASIC21.59■■□□□ 1.05
FOXN4Q96NZ1 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
FOXN4Q96NZ1 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.59■■□□□ 1.05
FOXN4Q96NZ1 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
FOXN4Q96NZ1 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.59■■□□□ 1.05
FOXN4Q96NZ1 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
FOXN4Q96NZ1 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
FOXN4Q96NZ1 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
FOXN4Q96NZ1 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
FOXN4Q96NZ1 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
FOXN4Q96NZ1 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
FOXN4Q96NZ1 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
FOXN4Q96NZ1 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.58■■□□□ 1.05
FOXN4Q96NZ1 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
FOXN4Q96NZ1 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.57■■□□□ 1.04
FOXN4Q96NZ1 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
FOXN4Q96NZ1 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
FOXN4Q96NZ1 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
FOXN4Q96NZ1 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.57■■□□□ 1.04
FOXN4Q96NZ1 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
FOXN4Q96NZ1 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
FOXN4Q96NZ1 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
FOXN4Q96NZ1 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
FOXN4Q96NZ1 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
FOXN4Q96NZ1 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
FOXN4Q96NZ1 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
FOXN4Q96NZ1 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
FOXN4Q96NZ1 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.55■■□□□ 1.04
FOXN4Q96NZ1 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.55■■□□□ 1.04
FOXN4Q96NZ1 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.55■■□□□ 1.04
FOXN4Q96NZ1 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
FOXN4Q96NZ1 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
FOXN4Q96NZ1 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
FOXN4Q96NZ1 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.54■■□□□ 1.04
FOXN4Q96NZ1 RARRES2P2-201ENST00000394842 485 ntBASIC21.54■■□□□ 1.04
FOXN4Q96NZ1 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.54■■□□□ 1.04
FOXN4Q96NZ1 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
FOXN4Q96NZ1 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
FOXN4Q96NZ1 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
FOXN4Q96NZ1 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
FOXN4Q96NZ1 AC126177.7-201ENST00000547904 679 ntBASIC21.53■■□□□ 1.04
FOXN4Q96NZ1 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
FOXN4Q96NZ1 AC010501.1-201ENST00000606270 1962 ntBASIC21.53■■□□□ 1.04
FOXN4Q96NZ1 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXN4Q96NZ1 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
FOXN4Q96NZ1 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.52■■□□□ 1.04
FOXN4Q96NZ1 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
FOXN4Q96NZ1 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
FOXN4Q96NZ1 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.51■■□□□ 1.03
FOXN4Q96NZ1 AC022413.1-201ENST00000624602 984 ntBASIC21.51■■□□□ 1.03
FOXN4Q96NZ1 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXN4Q96NZ1 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
FOXN4Q96NZ1 RNF126P1-201ENST00000567452 1320 ntBASIC21.51■■□□□ 1.03
FOXN4Q96NZ1 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.51■■□□□ 1.03
FOXN4Q96NZ1 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.5■■□□□ 1.03
FOXN4Q96NZ1 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.5■■□□□ 1.03
FOXN4Q96NZ1 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.5■■□□□ 1.03
FOXN4Q96NZ1 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXN4Q96NZ1 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.5■■□□□ 1.03
FOXN4Q96NZ1 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
FOXN4Q96NZ1 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXN4Q96NZ1 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.49■■□□□ 1.03
FOXN4Q96NZ1 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
FOXN4Q96NZ1 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXN4Q96NZ1 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
FOXN4Q96NZ1 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
FOXN4Q96NZ1 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXN4Q96NZ1 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.48■■□□□ 1.03
FOXN4Q96NZ1 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXN4Q96NZ1 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXN4Q96NZ1 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXN4Q96NZ1 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
FOXN4Q96NZ1 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXN4Q96NZ1 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
FOXN4Q96NZ1 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
FOXN4Q96NZ1 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
FOXN4Q96NZ1 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.47■■□□□ 1.03
FOXN4Q96NZ1 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN4Q96NZ1 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN4Q96NZ1 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN4Q96NZ1 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.46■■□□□ 1.03
FOXN4Q96NZ1 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN4Q96NZ1 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN4Q96NZ1 AC096887.2-201ENST00000623443 1957 ntBASIC21.45■■□□□ 1.02
FOXN4Q96NZ1 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
FOXN4Q96NZ1 AL157400.5-201ENST00000507624 621 ntBASIC21.45■■□□□ 1.02
FOXN4Q96NZ1 AC060814.1-201ENST00000554326 538 ntBASIC21.45■■□□□ 1.02
FOXN4Q96NZ1 ABHD17AP5-201ENST00000580133 923 ntBASIC21.45■■□□□ 1.02
FOXN4Q96NZ1 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.45■■□□□ 1.02
FOXN4Q96NZ1 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
FOXN4Q96NZ1 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
FOXN4Q96NZ1 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms