Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CCHCR1Q8TD31 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC25.11■■□□□ 1.61
CCHCR1Q8TD31 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CCHCR1Q8TD31 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CCHCR1Q8TD31 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCHCR1Q8TD31 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCHCR1Q8TD31 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCHCR1Q8TD31 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCHCR1Q8TD31 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCHCR1Q8TD31 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCHCR1Q8TD31 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
CCHCR1Q8TD31 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC25.09■■□□□ 1.61
CCHCR1Q8TD31 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CCHCR1Q8TD31 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
CCHCR1Q8TD31 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.61
CCHCR1Q8TD31 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CCHCR1Q8TD31 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CCHCR1Q8TD31 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC25.08■■□□□ 1.61
CCHCR1Q8TD31 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CCHCR1Q8TD31 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CCHCR1Q8TD31 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.6
CCHCR1Q8TD31 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCHCR1Q8TD31 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCHCR1Q8TD31 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCHCR1Q8TD31 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCHCR1Q8TD31 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCHCR1Q8TD31 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC25.06■■□□□ 1.6
CCHCR1Q8TD31 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC25.06■■□□□ 1.6
CCHCR1Q8TD31 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC25.06■■□□□ 1.6
CCHCR1Q8TD31 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC25.06■■□□□ 1.6
CCHCR1Q8TD31 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CCHCR1Q8TD31 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCHCR1Q8TD31 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC25.05■■□□□ 1.6
CCHCR1Q8TD31 AC093323.1-202ENST00000635031 2045 ntBASIC25.05■■□□□ 1.6
CCHCR1Q8TD31 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CCHCR1Q8TD31 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
CCHCR1Q8TD31 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
CCHCR1Q8TD31 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC25.05■■□□□ 1.6
CCHCR1Q8TD31 ERN1-208ENST00000606895 2068 ntBASIC25.05■■□□□ 1.6
CCHCR1Q8TD31 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCHCR1Q8TD31 CEBPA-AS1-201ENST00000592982 2198 ntBASIC25.04■■□□□ 1.6
CCHCR1Q8TD31 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCHCR1Q8TD31 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC25.04■■□□□ 1.6
CCHCR1Q8TD31 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCHCR1Q8TD31 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CCHCR1Q8TD31 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCHCR1Q8TD31 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC25.03■■□□□ 1.6
CCHCR1Q8TD31 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCHCR1Q8TD31 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC25.02■■□□□ 1.6
CCHCR1Q8TD31 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
CCHCR1Q8TD31 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
CCHCR1Q8TD31 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC25.02■■□□□ 1.6
CCHCR1Q8TD31 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCHCR1Q8TD31 TPT1-202ENST00000379055 948 ntTSL 2 BASIC25.02■■□□□ 1.6
CCHCR1Q8TD31 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCHCR1Q8TD31 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC25.02■■□□□ 1.6
CCHCR1Q8TD31 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CCHCR1Q8TD31 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CCHCR1Q8TD31 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC25.01■■□□□ 1.59
CCHCR1Q8TD31 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCHCR1Q8TD31 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
CCHCR1Q8TD31 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
CCHCR1Q8TD31 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC25■■□□□ 1.59
CCHCR1Q8TD31 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
CCHCR1Q8TD31 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC25■■□□□ 1.59
CCHCR1Q8TD31 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CCHCR1Q8TD31 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CCHCR1Q8TD31 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC24.99■■□□□ 1.59
CCHCR1Q8TD31 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCHCR1Q8TD31 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC24.99■■□□□ 1.59
CCHCR1Q8TD31 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCHCR1Q8TD31 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
CCHCR1Q8TD31 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC24.98■■□□□ 1.59
CCHCR1Q8TD31 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC24.98■■□□□ 1.59
CCHCR1Q8TD31 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCHCR1Q8TD31 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC24.98■■□□□ 1.59
CCHCR1Q8TD31 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCHCR1Q8TD31 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCHCR1Q8TD31 AC126177.7-201ENST00000547904 679 ntBASIC24.97■■□□□ 1.59
CCHCR1Q8TD31 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC24.97■■□□□ 1.59
CCHCR1Q8TD31 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.97■■□□□ 1.59
CCHCR1Q8TD31 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCHCR1Q8TD31 AC142381.3-201ENST00000568208 1670 ntBASIC24.97■■□□□ 1.59
CCHCR1Q8TD31 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCHCR1Q8TD31 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCHCR1Q8TD31 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCHCR1Q8TD31 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC24.96■■□□□ 1.59
CCHCR1Q8TD31 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCHCR1Q8TD31 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC24.96■■□□□ 1.59
CCHCR1Q8TD31 SRP68-213ENST00000629930 165 ntTSL 5 BASIC24.96■■□□□ 1.59
CCHCR1Q8TD31 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC24.96■■□□□ 1.59
CCHCR1Q8TD31 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCHCR1Q8TD31 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
CCHCR1Q8TD31 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC24.95■■□□□ 1.58
CCHCR1Q8TD31 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
CCHCR1Q8TD31 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CCHCR1Q8TD31 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCHCR1Q8TD31 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CCHCR1Q8TD31 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC24.94■■□□□ 1.58
CCHCR1Q8TD31 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC24.94■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms