Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
NKX3-2P78367 ABCB10P1-201ENST00000614297 2181 ntBASIC27.19■■□□□ 1.94
NKX3-2P78367 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC27.19■■□□□ 1.94
NKX3-2P78367 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
NKX3-2P78367 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC27.18■■□□□ 1.94
NKX3-2P78367 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC27.18■■□□□ 1.94
NKX3-2P78367 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
NKX3-2P78367 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
NKX3-2P78367 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
NKX3-2P78367 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC27.18■■□□□ 1.94
NKX3-2P78367 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
NKX3-2P78367 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC27.18■■□□□ 1.94
NKX3-2P78367 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC27.17■■□□□ 1.94
NKX3-2P78367 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC27.17■■□□□ 1.94
NKX3-2P78367 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
NKX3-2P78367 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
NKX3-2P78367 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
NKX3-2P78367 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC27.16■■□□□ 1.94
NKX3-2P78367 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
NKX3-2P78367 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
NKX3-2P78367 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
NKX3-2P78367 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC27.16■■□□□ 1.94
NKX3-2P78367 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
NKX3-2P78367 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
NKX3-2P78367 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
NKX3-2P78367 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC27.16■■□□□ 1.94
NKX3-2P78367 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
NKX3-2P78367 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC27.15■■□□□ 1.94
NKX3-2P78367 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
NKX3-2P78367 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC27.15■■□□□ 1.94
NKX3-2P78367 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
NKX3-2P78367 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC27.14■■□□□ 1.94
NKX3-2P78367 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
NKX3-2P78367 KRT18P24-201ENST00000344739 1156 ntBASIC27.14■■□□□ 1.94
NKX3-2P78367 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC27.14■■□□□ 1.94
NKX3-2P78367 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
NKX3-2P78367 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC27.14■■□□□ 1.94
NKX3-2P78367 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC27.13■■□□□ 1.93
NKX3-2P78367 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
NKX3-2P78367 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
NKX3-2P78367 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
NKX3-2P78367 AL449106.1-201ENST00000608517 1980 ntBASIC27.13■■□□□ 1.93
NKX3-2P78367 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
NKX3-2P78367 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
NKX3-2P78367 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
NKX3-2P78367 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC27.12■■□□□ 1.93
NKX3-2P78367 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC27.11■■□□□ 1.93
NKX3-2P78367 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC27.11■■□□□ 1.93
NKX3-2P78367 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
NKX3-2P78367 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
NKX3-2P78367 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC27.1■■□□□ 1.93
NKX3-2P78367 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
NKX3-2P78367 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC27.09■■□□□ 1.93
NKX3-2P78367 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC27.08■■□□□ 1.93
NKX3-2P78367 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC27.08■■□□□ 1.93
NKX3-2P78367 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC27.08■■□□□ 1.93
NKX3-2P78367 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC27.08■■□□□ 1.93
NKX3-2P78367 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
NKX3-2P78367 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
NKX3-2P78367 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC27.07■■□□□ 1.92
NKX3-2P78367 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC27.07■■□□□ 1.92
NKX3-2P78367 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
NKX3-2P78367 LSM7-203ENST00000585409 512 ntTSL 2 BASIC27.07■■□□□ 1.92
NKX3-2P78367 MIR4787-201ENST00000607364 84 ntBASIC27.07■■□□□ 1.92
NKX3-2P78367 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
NKX3-2P78367 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
NKX3-2P78367 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
NKX3-2P78367 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
NKX3-2P78367 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
NKX3-2P78367 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC27.06■■□□□ 1.92
NKX3-2P78367 BX664725.1-201ENST00000438252 379 ntBASIC27.06■■□□□ 1.92
NKX3-2P78367 KRT125P-201ENST00000546827 989 ntBASIC27.06■■□□□ 1.92
NKX3-2P78367 AC137630.3-201ENST00000607245 391 ntBASIC27.06■■□□□ 1.92
NKX3-2P78367 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
NKX3-2P78367 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC27.05■■□□□ 1.92
NKX3-2P78367 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
NKX3-2P78367 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC27.05■■□□□ 1.92
NKX3-2P78367 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC27.05■■□□□ 1.92
NKX3-2P78367 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC27.05■■□□□ 1.92
NKX3-2P78367 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC27.05■■□□□ 1.92
NKX3-2P78367 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC27.05■■□□□ 1.92
NKX3-2P78367 GRAMD4P7-201ENST00000578182 1232 ntBASIC27.05■■□□□ 1.92
NKX3-2P78367 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC27.05■■□□□ 1.92
NKX3-2P78367 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
NKX3-2P78367 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
NKX3-2P78367 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
NKX3-2P78367 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
NKX3-2P78367 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
NKX3-2P78367 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
NKX3-2P78367 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
NKX3-2P78367 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC27.03■■□□□ 1.92
NKX3-2P78367 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC27.03■■□□□ 1.92
NKX3-2P78367 UNC93B8-201ENST00000511903 705 ntBASIC27.03■■□□□ 1.92
NKX3-2P78367 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
NKX3-2P78367 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
NKX3-2P78367 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
NKX3-2P78367 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
NKX3-2P78367 ST7-205ENST00000393446 2114 ntTSL 5 BASIC27.01■■□□□ 1.91
NKX3-2P78367 DRD5P2-201ENST00000421395 2012 ntBASIC27.01■■□□□ 1.91
NKX3-2P78367 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms