Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.49■□□□□ 0.87
PDLIM4P50479 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
PDLIM4P50479 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PDLIM4P50479 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDLIM4P50479 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
PDLIM4P50479 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.49■□□□□ 0.87
PDLIM4P50479 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC20.49■□□□□ 0.87
PDLIM4P50479 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.49■□□□□ 0.87
PDLIM4P50479 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.49■□□□□ 0.87
PDLIM4P50479 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.49■□□□□ 0.87
PDLIM4P50479 AC142086.6-201ENST00000621154 1765 ntBASIC20.49■□□□□ 0.87
PDLIM4P50479 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
PDLIM4P50479 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.48■□□□□ 0.87
PDLIM4P50479 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PDLIM4P50479 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PDLIM4P50479 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PDLIM4P50479 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.48■□□□□ 0.87
PDLIM4P50479 MIR4508-201ENST00000584178 70 ntBASIC20.48■□□□□ 0.87
PDLIM4P50479 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PDLIM4P50479 PVT1_1.1-201ENST00000615125 194 ntBASIC20.48■□□□□ 0.87
PDLIM4P50479 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PDLIM4P50479 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PDLIM4P50479 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.47■□□□□ 0.87
PDLIM4P50479 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.47■□□□□ 0.87
PDLIM4P50479 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.47■□□□□ 0.87
PDLIM4P50479 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PDLIM4P50479 AC103834.1-201ENST00000520383 144 ntBASIC20.47■□□□□ 0.87
PDLIM4P50479 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.47■□□□□ 0.87
PDLIM4P50479 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PDLIM4P50479 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.47■□□□□ 0.87
PDLIM4P50479 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PDLIM4P50479 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PDLIM4P50479 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
PDLIM4P50479 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PDLIM4P50479 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
PDLIM4P50479 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.45■□□□□ 0.86
PDLIM4P50479 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PDLIM4P50479 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.45■□□□□ 0.86
PDLIM4P50479 DRD5P2-201ENST00000421395 2012 ntBASIC20.44■□□□□ 0.86
PDLIM4P50479 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
PDLIM4P50479 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PDLIM4P50479 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PDLIM4P50479 AC009299.2-201ENST00000482477 511 ntBASIC20.44■□□□□ 0.86
PDLIM4P50479 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PDLIM4P50479 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PDLIM4P50479 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.44■□□□□ 0.86
PDLIM4P50479 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
PDLIM4P50479 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
PDLIM4P50479 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PDLIM4P50479 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.43■□□□□ 0.86
PDLIM4P50479 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
PDLIM4P50479 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PDLIM4P50479 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PDLIM4P50479 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.42■□□□□ 0.86
PDLIM4P50479 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDLIM4P50479 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.42■□□□□ 0.86
PDLIM4P50479 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
PDLIM4P50479 AC087393.1-201ENST00000582896 145 ntBASIC20.42■□□□□ 0.86
PDLIM4P50479 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDLIM4P50479 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
PDLIM4P50479 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDLIM4P50479 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PDLIM4P50479 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDLIM4P50479 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDLIM4P50479 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PDLIM4P50479 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
PDLIM4P50479 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PDLIM4P50479 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.41■□□□□ 0.86
PDLIM4P50479 AC019171.1-201ENST00000601251 1056 ntBASIC20.41■□□□□ 0.86
PDLIM4P50479 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PDLIM4P50479 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
PDLIM4P50479 AL449106.1-201ENST00000608517 1980 ntBASIC20.41■□□□□ 0.86
PDLIM4P50479 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.41■□□□□ 0.86
PDLIM4P50479 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
PDLIM4P50479 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PDLIM4P50479 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
PDLIM4P50479 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PDLIM4P50479 KRT18P10-201ENST00000388836 1287 ntBASIC20.4■□□□□ 0.86
PDLIM4P50479 RPS2P7-201ENST00000447334 885 ntBASIC20.4■□□□□ 0.86
PDLIM4P50479 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PDLIM4P50479 AL031848.2-201ENST00000607670 837 ntBASIC20.4■□□□□ 0.86
PDLIM4P50479 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
PDLIM4P50479 LINC01003-201ENST00000564834 1764 ntBASIC20.39■□□□□ 0.86
PDLIM4P50479 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PDLIM4P50479 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
PDLIM4P50479 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDLIM4P50479 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDLIM4P50479 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDLIM4P50479 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDLIM4P50479 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDLIM4P50479 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDLIM4P50479 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
PDLIM4P50479 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.38■□□□□ 0.85
PDLIM4P50479 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PDLIM4P50479 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDLIM4P50479 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
PDLIM4P50479 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PDLIM4P50479 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDLIM4P50479 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PDLIM4P50479 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms