Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ABCA1O95477 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ABCA1O95477 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.28■□□□□ 0.84
ABCA1O95477 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ABCA1O95477 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.28■□□□□ 0.84
ABCA1O95477 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.27■□□□□ 0.84
ABCA1O95477 AP002414.2-202ENST00000590929 1450 ntBASIC20.27■□□□□ 0.84
ABCA1O95477 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ABCA1O95477 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ABCA1O95477 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
ABCA1O95477 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
ABCA1O95477 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.27■□□□□ 0.83
ABCA1O95477 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ABCA1O95477 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ABCA1O95477 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ABCA1O95477 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ABCA1O95477 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ABCA1O95477 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ABCA1O95477 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.24■□□□□ 0.83
ABCA1O95477 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
ABCA1O95477 AC087393.1-201ENST00000582896 145 ntBASIC20.24■□□□□ 0.83
ABCA1O95477 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ABCA1O95477 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ABCA1O95477 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ABCA1O95477 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.23■□□□□ 0.83
ABCA1O95477 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ABCA1O95477 AC019171.1-201ENST00000601251 1056 ntBASIC20.23■□□□□ 0.83
ABCA1O95477 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ABCA1O95477 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
ABCA1O95477 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
ABCA1O95477 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.23■□□□□ 0.83
ABCA1O95477 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
ABCA1O95477 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ABCA1O95477 DRD5P2-201ENST00000421395 2012 ntBASIC20.22■□□□□ 0.83
ABCA1O95477 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
ABCA1O95477 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.22■□□□□ 0.83
ABCA1O95477 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.22■□□□□ 0.83
ABCA1O95477 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.22■□□□□ 0.83
ABCA1O95477 AL359504.2-201ENST00000605506 1601 ntBASIC20.22■□□□□ 0.83
ABCA1O95477 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ABCA1O95477 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ABCA1O95477 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ABCA1O95477 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.22■□□□□ 0.83
ABCA1O95477 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.21■□□□□ 0.83
ABCA1O95477 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
ABCA1O95477 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
ABCA1O95477 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.21■□□□□ 0.83
ABCA1O95477 WHAMMP3-201ENST00000611636 1609 ntBASIC20.21■□□□□ 0.83
ABCA1O95477 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ABCA1O95477 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.21■□□□□ 0.83
ABCA1O95477 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.21■□□□□ 0.83
ABCA1O95477 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
ABCA1O95477 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ABCA1O95477 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.2■□□□□ 0.82
ABCA1O95477 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.2■□□□□ 0.82
ABCA1O95477 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.2■□□□□ 0.82
ABCA1O95477 KRT125P-201ENST00000546827 989 ntBASIC20.2■□□□□ 0.82
ABCA1O95477 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.2■□□□□ 0.82
ABCA1O95477 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ABCA1O95477 AC008406.3-201ENST00000620001 1374 ntBASIC20.19■□□□□ 0.82
ABCA1O95477 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
ABCA1O95477 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.19■□□□□ 0.82
ABCA1O95477 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.19■□□□□ 0.82
ABCA1O95477 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ABCA1O95477 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.19■□□□□ 0.82
ABCA1O95477 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ABCA1O95477 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
ABCA1O95477 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
ABCA1O95477 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
ABCA1O95477 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.18■□□□□ 0.82
ABCA1O95477 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ABCA1O95477 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
ABCA1O95477 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
ABCA1O95477 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
ABCA1O95477 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ABCA1O95477 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ABCA1O95477 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.17■□□□□ 0.82
ABCA1O95477 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
ABCA1O95477 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.17■□□□□ 0.82
ABCA1O95477 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
ABCA1O95477 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
ABCA1O95477 AC022616.5-201ENST00000518796 181 ntBASIC20.16■□□□□ 0.82
ABCA1O95477 MIR4787-201ENST00000607364 84 ntBASIC20.16■□□□□ 0.82
ABCA1O95477 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ABCA1O95477 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC20.16■□□□□ 0.82
ABCA1O95477 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ABCA1O95477 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.16■□□□□ 0.82
ABCA1O95477 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
ABCA1O95477 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.15■□□□□ 0.82
ABCA1O95477 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ABCA1O95477 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.14■□□□□ 0.82
ABCA1O95477 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
ABCA1O95477 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.14■□□□□ 0.82
ABCA1O95477 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.14■□□□□ 0.81
ABCA1O95477 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ABCA1O95477 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
ABCA1O95477 BX664725.1-201ENST00000438252 379 ntBASIC20.13■□□□□ 0.81
ABCA1O95477 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ABCA1O95477 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
ABCA1O95477 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms