Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV1-2A0A0B4J238 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.04■□□□□ 0.96
TRAV1-2A0A0B4J238 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV1-2A0A0B4J238 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV1-2A0A0B4J238 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV1-2A0A0B4J238 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV1-2A0A0B4J238 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC21.03■□□□□ 0.96
TRAV1-2A0A0B4J238 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV1-2A0A0B4J238 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV1-2A0A0B4J238 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV1-2A0A0B4J238 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
TRAV1-2A0A0B4J238 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV1-2A0A0B4J238 AC012676.1-201ENST00000574705 1949 ntBASIC21.02■□□□□ 0.96
TRAV1-2A0A0B4J238 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.02■□□□□ 0.96
TRAV1-2A0A0B4J238 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.02■□□□□ 0.96
TRAV1-2A0A0B4J238 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV1-2A0A0B4J238 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV1-2A0A0B4J238 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV1-2A0A0B4J238 AP003733.4-201ENST00000623785 1697 ntBASIC21.02■□□□□ 0.95
TRAV1-2A0A0B4J238 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
TRAV1-2A0A0B4J238 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV1-2A0A0B4J238 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
TRAV1-2A0A0B4J238 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV1-2A0A0B4J238 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
TRAV1-2A0A0B4J238 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV1-2A0A0B4J238 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.01■□□□□ 0.95
TRAV1-2A0A0B4J238 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.01■□□□□ 0.95
TRAV1-2A0A0B4J238 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV1-2A0A0B4J238 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV1-2A0A0B4J238 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
TRAV1-2A0A0B4J238 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV1-2A0A0B4J238 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV1-2A0A0B4J238 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21■□□□□ 0.95
TRAV1-2A0A0B4J238 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV1-2A0A0B4J238 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV1-2A0A0B4J238 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV1-2A0A0B4J238 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21■□□□□ 0.95
TRAV1-2A0A0B4J238 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21■□□□□ 0.95
TRAV1-2A0A0B4J238 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.99■□□□□ 0.95
TRAV1-2A0A0B4J238 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.99■□□□□ 0.95
TRAV1-2A0A0B4J238 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV1-2A0A0B4J238 MIR3665-201ENST00000578708 105 ntBASIC20.99■□□□□ 0.95
TRAV1-2A0A0B4J238 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.99■□□□□ 0.95
TRAV1-2A0A0B4J238 LINC01124-201ENST00000409786 2117 ntBASIC20.99■□□□□ 0.95
TRAV1-2A0A0B4J238 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV1-2A0A0B4J238 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.98■□□□□ 0.95
TRAV1-2A0A0B4J238 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
TRAV1-2A0A0B4J238 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.97■□□□□ 0.95
TRAV1-2A0A0B4J238 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV1-2A0A0B4J238 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV1-2A0A0B4J238 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV1-2A0A0B4J238 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV1-2A0A0B4J238 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV1-2A0A0B4J238 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV1-2A0A0B4J238 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV1-2A0A0B4J238 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.97■□□□□ 0.95
TRAV1-2A0A0B4J238 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV1-2A0A0B4J238 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV1-2A0A0B4J238 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV1-2A0A0B4J238 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV1-2A0A0B4J238 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV1-2A0A0B4J238 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV1-2A0A0B4J238 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV1-2A0A0B4J238 AC133561.1-201ENST00000568600 2415 ntBASIC20.96■□□□□ 0.95
TRAV1-2A0A0B4J238 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.95■□□□□ 0.94
TRAV1-2A0A0B4J238 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV1-2A0A0B4J238 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV1-2A0A0B4J238 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV1-2A0A0B4J238 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV1-2A0A0B4J238 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV1-2A0A0B4J238 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV1-2A0A0B4J238 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
TRAV1-2A0A0B4J238 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.95■□□□□ 0.94
TRAV1-2A0A0B4J238 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV1-2A0A0B4J238 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV1-2A0A0B4J238 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
TRAV1-2A0A0B4J238 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV1-2A0A0B4J238 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV1-2A0A0B4J238 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV1-2A0A0B4J238 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV1-2A0A0B4J238 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV1-2A0A0B4J238 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV1-2A0A0B4J238 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV1-2A0A0B4J238 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV1-2A0A0B4J238 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV1-2A0A0B4J238 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV1-2A0A0B4J238 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV1-2A0A0B4J238 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.93■□□□□ 0.94
TRAV1-2A0A0B4J238 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV1-2A0A0B4J238 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
TRAV1-2A0A0B4J238 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV1-2A0A0B4J238 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV1-2A0A0B4J238 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV1-2A0A0B4J238 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV1-2A0A0B4J238 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
TRAV1-2A0A0B4J238 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV1-2A0A0B4J238 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
TRAV1-2A0A0B4J238 AC097639.1-201ENST00000565519 1891 ntBASIC20.92■□□□□ 0.94
TRAV1-2A0A0B4J238 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.92■□□□□ 0.94
TRAV1-2A0A0B4J238 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms