Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CDH9Q9ULB4 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 AC129492.6-201ENST00000611383 1305 ntBASIC18.15■□□□□ 0.5
CDH9Q9ULB4 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 AC002310.6-201ENST00000624451 1377 ntBASIC18.15■□□□□ 0.5
CDH9Q9ULB4 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.15■□□□□ 0.5
CDH9Q9ULB4 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
CDH9Q9ULB4 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
CDH9Q9ULB4 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CDH9Q9ULB4 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 BX842568.4-201ENST00000421222 227 ntBASIC18.14■□□□□ 0.49
CDH9Q9ULB4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 CXCL1P1-201ENST00000502804 216 ntBASIC18.14■□□□□ 0.49
CDH9Q9ULB4 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 AC018845.2-201ENST00000568326 409 ntBASIC18.14■□□□□ 0.49
CDH9Q9ULB4 AC002347.1-201ENST00000569543 541 ntBASIC18.14■□□□□ 0.49
CDH9Q9ULB4 AC010507.1-201ENST00000633895 436 ntBASIC18.14■□□□□ 0.49
CDH9Q9ULB4 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CDH9Q9ULB4 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.13■□□□□ 0.49
CDH9Q9ULB4 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CDH9Q9ULB4 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CDH9Q9ULB4 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH9Q9ULB4 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH9Q9ULB4 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH9Q9ULB4 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDH9Q9ULB4 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.13■□□□□ 0.49
CDH9Q9ULB4 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH9Q9ULB4 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDH9Q9ULB4 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH9Q9ULB4 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH9Q9ULB4 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDH9Q9ULB4 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.13■□□□□ 0.49
CDH9Q9ULB4 AC023274.1-201ENST00000418278 595 ntBASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms