Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 NEFHP1-201ENST00000412845 2629 ntBASIC17.67■□□□□ 0.42
TDP1Q9NUW8 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 AC140658.5-201ENST00000438532 169 ntBASIC17.67■□□□□ 0.42
TDP1Q9NUW8 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.67■□□□□ 0.42
TDP1Q9NUW8 AC022145.2-201ENST00000598203 171 ntBASIC17.67■□□□□ 0.42
TDP1Q9NUW8 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 MIR4515-201ENST00000584082 81 ntBASIC17.66■□□□□ 0.42
TDP1Q9NUW8 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.66■□□□□ 0.42
TDP1Q9NUW8 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.66■□□□□ 0.42
TDP1Q9NUW8 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 AL139400.1-201ENST00000366220 510 ntBASIC17.65■□□□□ 0.42
TDP1Q9NUW8 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 ADH5P3-201ENST00000433842 1137 ntBASIC17.65■□□□□ 0.42
TDP1Q9NUW8 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TDP1Q9NUW8 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
TDP1Q9NUW8 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
TDP1Q9NUW8 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TDP1Q9NUW8 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.64■□□□□ 0.42
TDP1Q9NUW8 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TDP1Q9NUW8 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 FAM86C2P-203ENST00000528684 1004 ntBASIC17.64■□□□□ 0.41
TDP1Q9NUW8 AC004449.1-201ENST00000564240 433 ntBASIC17.64■□□□□ 0.41
TDP1Q9NUW8 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms