Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX2Q9NPC8 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 RBM17P3-201ENST00000417687 1192 ntBASIC18.46■□□□□ 0.55
SIX2Q9NPC8 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 UBALD1-205ENST00000590891 2641 ntBASIC18.46■□□□□ 0.55
SIX2Q9NPC8 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 AL645728.1-201ENST00000366221 2101 ntBASIC18.46■□□□□ 0.55
SIX2Q9NPC8 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX2Q9NPC8 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
SIX2Q9NPC8 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.54
SIX2Q9NPC8 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 AKR1C7P-201ENST00000305623 895 ntBASIC18.45■□□□□ 0.54
SIX2Q9NPC8 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 FGFR3P6-201ENST00000457012 610 ntBASIC18.45■□□□□ 0.54
SIX2Q9NPC8 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 AL355877.3-201ENST00000622820 899 ntBASIC18.45■□□□□ 0.54
SIX2Q9NPC8 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX2Q9NPC8 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms