Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 AL138831.2-201ENST00000606564 490 ntBASIC12.95□□□□□ -0.34
LINC00477Q96M19 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 SLC25A1P3-201ENST00000395415 828 ntBASIC12.94□□□□□ -0.34
LINC00477Q96M19 DAP-202ENST00000432074 1048 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 AC246785.2-201ENST00000432512 513 ntBASIC12.94□□□□□ -0.34
LINC00477Q96M19 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 VENTXP7-201ENST00000475503 772 ntBASIC12.94□□□□□ -0.34
LINC00477Q96M19 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 STK25P1-201ENST00000585406 838 ntBASIC12.94□□□□□ -0.34
LINC00477Q96M19 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 AL592071.1-201ENST00000611956 408 ntBASIC12.94□□□□□ -0.34
LINC00477Q96M19 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC12.94□□□□□ -0.34
LINC00477Q96M19 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC00477Q96M19 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 AC211429.1-201ENST00000415277 523 ntBASIC12.93□□□□□ -0.34
LINC00477Q96M19 AGGF1P2-201ENST00000426656 2106 ntBASIC12.93□□□□□ -0.34
LINC00477Q96M19 AC104076.2-201ENST00000448912 469 ntBASIC12.93□□□□□ -0.34
LINC00477Q96M19 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 STK19B-204ENST00000512515 211 ntBASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms