Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 AC092118.2-201ENST00000613495 667 ntBASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC28AQ8IWP9 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 NME6-213ENST00000451657 871 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 OR2A1-AS1-201ENST00000462305 773 ntBASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 AC097658.1-201ENST00000475555 843 ntBASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
CCDC28AQ8IWP9 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 HEIH-201ENST00000623091 1652 ntBASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 AP006587.1-201ENST00000534129 1502 ntBASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 DUSP5P2-201ENST00000426873 1033 ntBASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 MARS-234ENST00000630571 216 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 MARS-235ENST00000630803 183 ntTSL 3 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms